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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Synergistota
Anticodon = CTT
HIT:
6 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.486069 (2 seq.)
>C121008062
CP003198
Synergistota
Acetomicrobium mobile DSM 13181 [CP003198]
707489
707564
+
Lys
CTT
[Ensembl]
¡û
>W1710594091
FSQZ01000001
Synergistota
Acetomicrobium flavidum [FSQZ]
374109
374034
-
Lys
CTT
[ENA]
¡û
Identical group No.553409 (6 seq.)
>W141146865
AWWC01000020
Synergistota
Jonquetella sp. BV3C21 [AWWC]
15216
15291
+
Lys
CTT
[ENA]
¡û
>W141146867
AWWC01000020
Synergistota
Jonquetella sp. BV3C21 [AWWC]
15397
15472
+
Lys
CTT
[ENA]
¡û
>W09132974
ACOO02000025
Synergistota
Jonquetella anthropi E3_33 E1 [ACOO]
14398
14473
+
Lys
CTT
[ENA]
¡û
>W09132976
ACOO02000025
Synergistota
Jonquetella anthropi E3_33 E1 [ACOO]
14579
14654
+
Lys
CTT
[ENA]
¡û
>W121017497
AGRU01000003
Synergistota
Jonquetella anthropi DSM 22815 [AGRU]
310959
311034
+
Lys
CTT
[ENA]
¡û
>W121017499
AGRU01000003
Synergistota
Jonquetella anthropi DSM 22815 [AGRU]
311140
311215
+
Lys
CTT
[ENA]
¡û
Identical group No.628645 (1 seq.)
>W1710608683
FXBB01000001
Synergistota
Dethiosulfovibrio salsuginis [FXBB]
100511
100436
-
Lys
CTT
[ENA]
¡û
Identical group No.629969 (1 seq.)
>W141278959
JAFY01000007
Synergistota
Aminiphilus circumscriptus DSM 16581 [JAFY]
428491
428566
+
Lys
CTT
[ENA]
¡û
Identical group No.629970 (1 seq.)
>W141278970
JAFY01000007
Synergistota
Aminiphilus circumscriptus DSM 16581 [JAFY]
697375
697450
+
Lys
CTT
[ENA]
¡û
Identical group No.642159 (1 seq.)
>W141279004
JAFZ01000001
Synergistota
Aminobacterium mobile DSM 12262 [JAFZ]
1226171
1226246
+
Lys
CTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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