This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Synergistota
Anticodon = GAA
HIT:
10 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.490520 (2 seq.)
>W1711629538
MPPC01000004
Synergistota
Aminobacterium sp. EBM-42 [MPPC]
80671
80596
-
Phe
GAA
[ENA]
¡û
>C10100298
CP001997
Synergistota
Aminobacterium colombiense DSM 12261 [CP001997]
337231
337306
+
Phe
GAA
[Ensembl]
¡û
Identical group No.491397 (7 seq.)
>W141701185
JMKI01000002
Synergistota
Synergistes jonesii [JMKI]
14702
14777
+
Phe
GAA
[ENA]
¡û
>W121031612
AHGV01000001
Synergistota
Thermanaerovibrio velox DSM 12556 [AHGV]
297231
297306
+
Phe
GAA
[ENA]
¡û
>W1710629228
JPZQ01000001
Synergistota
Synergistes jonesii [JPZQ]
12659
12734
+
Phe
GAA
[ENA]
¡û
>W1710629271
JPZR01000001
Synergistota
Synergistes jonesii [JPZR]
12659
12734
+
Phe
GAA
[ENA]
¡û
>W1710629314
JPZS01000001
Synergistota
Synergistes jonesii [JPZS]
12659
12734
+
Phe
GAA
[ENA]
¡û
>W1710631854
JQEK01000047
Synergistota
Synergistes jonesii [JQEK]
172166
172091
-
Phe
GAA
[ENA]
¡û
>W1710631862
JQEL01000001
Synergistota
Synergistes jonesii [JQEL]
12659
12734
+
Phe
GAA
[ENA]
¡û
Identical group No.538077 (1 seq.)
>C161104049
FP929056
Synergistota
Fretibacterium fastidiosum SGP1 [FP929056]
945335
945260
-
Phe
GAA
-
¡û
Identical group No.541235 (1 seq.)
>W11300462
ADFP01000084
Synergistota
Pyramidobacter piscolens W5455 [ADFP]
4947
5022
+
Phe
GAA
[ENA]
¡û
Identical group No.541395 (1 seq.)
>W11138619
AEIV01000002
Synergistota
Aminomonas paucivorans DSM 12260 [AEIV]
707382
707307
-
Phe
GAA
[ENA]
¡û
Identical group No.553405 (3 seq.)
>W141146851
AWWC01000018
Synergistota
Jonquetella sp. BV3C21 [AWWC]
46287
46362
+
Phe
GAA
[ENA]
¡û
>W09132953
ACOO02000017
Synergistota
Jonquetella anthropi E3_33 E1 [ACOO]
46520
46595
+
Phe
GAA
[ENA]
¡û
>W121017480
AGRU01000003
Synergistota
Jonquetella anthropi DSM 22815 [AGRU]
51259
51334
+
Phe
GAA
[ENA]
¡û
Identical group No.565201 (1 seq.)
>W131157317
AQRZ01000027
Synergistota
Synergistetes bacterium JGI 0000079-D21 [AQRZ]
1116
1041
-
Phe
GAA
[ENA]
¡û
Identical group No.621929 (1 seq.)
>W09108893
ABTR01000001
Synergistota
Dethiosulfovibrio peptidovorans DSM 11002 [ABTR]
416866
416791
-
Phe
GAA
[ENA]
¡û
Identical group No.641281 (1 seq.)
>C121005672
CP003096
Synergistota
Thermovirga lienii DSM 17291 [CP003096]
484223
484298
+
Phe
GAA
[Ensembl]
¡û
Identical group No.642162 (1 seq.)
>W141279028
JAFZ01000004
Synergistota
Aminobacterium mobile DSM 12262 [JAFZ]
84865
84790
-
Phe
GAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK