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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Synergistota
Anticodon = GAA
HIT:
16 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.461419 (15 seq.)
>WENV181230276
OFEK01000582
[OFEK] activated sludge metagenome; Anaerobic digester
25266
25341
+
Phe
GAA
[ENA]
¢þ
>WENV183514099
OMKS01011869
[OMKS] sediment metagenome; hot spring sediment
4406
4331
-
Phe
GAA
[ENA]
¢þ
>WENV170008228
AMZC01005281
[AMZC] bioreactor sludge metagenome; anaerobic thermophilic cellulolytic sludge from lab reactor
1339
1414
+
Phe
GAA
[ENA]
¢þ
>WENV170561536
CZCA01012879
[CZCA] anaerobic digester metagenome; anaerobic digester
1196
1271
+
Phe
GAA
[ENA]
¢þ
>WENV170562825
CZCB01005732
[CZCB] anaerobic digester metagenome; anaerobic digester
1196
1271
+
Phe
GAA
[ENA]
¢þ
>WENV170685654
LFRM01103005
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
702
627
-
Phe
GAA
[ENA]
¢þ
>WENV170968341
MTKW01008389
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
341
266
-
Phe
GAA
[ENA]
¢þ
>WENV170968677
MTKW01012995
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
390
315
-
Phe
GAA
[ENA]
¢þ
>WENV170972401
MTKX01029124
[MTKX] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
21165
21240
+
Phe
GAA
[ENA]
¢þ
>WENV170974160
MTKY01054733
[MTKY] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
19331
19406
+
Phe
GAA
[ENA]
¢þ
>WENV170976294
MTKZ01006422
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
135546
135621
+
Phe
GAA
[ENA]
¢þ
>W09126629
ACJX01000176
Synergistota
Acetomicrobium hydrogeniformans ATCC BAA-1850 [ACJX]
15024
14949
-
Phe
GAA
[ENA]
¡û
>C121008048
CP003198
Synergistota
Acetomicrobium mobile DSM 13181 [CP003198]
216920
216995
+
Phe
GAA
[Ensembl]
¡û
>W1710530851
FNPD01000014
Synergistota
Acetomicrobium thermoterrenum DSM 13490 [FNPD]
32595
32520
-
Phe
GAA
[ENA]
¡û
>W1710594077
FSQZ01000001
Synergistota
Acetomicrobium flavidum [FSQZ]
854810
854735
-
Phe
GAA
[ENA]
¡û
Identical group No.466933 (27 seq.)
>W1711137613
LVBQ01000027
Synergistota
Synergistales bacterium Syner_03 [LVBQ]
30797
30872
+
Phe
GAA
[ENA]
¡û
>W1712039355
NFJQ01000002
Synergistota
Cloacibacillus sp. An23 [NFJQ]
128320
128395
+
Phe
GAA
[ENA]
¡û
>C171050539
CP016757
Synergistota
Cloacibacillus porcorum CL-84 [CP016757]
1584216
1584291
+
Phe
GAA
-
¡û
>C171050541
CP016757
Synergistota
Cloacibacillus porcorum CL-84 [CP016757]
1584524
1584599
+
Phe
GAA
-
¡û
>WENV180221152
OBAX01054985
[OBAX] human gut metagenome; human gut
10
85
+
Phe
GAA
[ENA]
¢þ
>WENV180223826
OBBH01039254
[OBBH] human gut metagenome; human gut
142
217
+
Phe
GAA
[ENA]
¢þ
>WENV180224020
OBBI01024341
[OBBI] human gut metagenome; human gut
194
269
+
Phe
GAA
[ENA]
¢þ
>WENV180240651
OBDD01041448
[OBDD] human gut metagenome; human gut
184
259
+
Phe
GAA
[ENA]
¢þ
>WENV180246686
OBDP01043695
[OBDP] human gut metagenome; human gut
117
42
-
Phe
GAA
[ENA]
¢þ
>WENV180274733
OBHE01025304
[OBHE] human gut metagenome; human gut
257
182
-
Phe
GAA
[ENA]
¢þ
>WENV180544256
OCIP01028414
[OCIP] human gut metagenome; human gut
288
363
+
Phe
GAA
[ENA]
¢þ
>WENV180544556
OCIQ01033797
[OCIQ] human gut metagenome; human gut
126
201
+
Phe
GAA
[ENA]
¢þ
>WENV180545467
OCIT01025001
[OCIT] human gut metagenome; human gut
215
290
+
Phe
GAA
[ENA]
¢þ
>WENV181908446
OGYB01000027
[OGYB] human gut metagenome; faeces
135939
135864
-
Phe
GAA
[ENA]
¢þ
>WENV181915170
OGYF01003639
[OGYF] human gut metagenome; faeces
9274
9349
+
Phe
GAA
[ENA]
¢þ
>WENV181915172
OGYF01003639
[OGYF] human gut metagenome; faeces
9584
9659
+
Phe
GAA
[ENA]
¢þ
>WENV182006066
OHBE01064678
[OHBE] human gut metagenome; faeces
574
499
-
Phe
GAA
[ENA]
¢þ
>WENV182031200
OHCS01005330
[OHCS] human gut metagenome; feces
3201
3126
-
Phe
GAA
[ENA]
¢þ
>WENV182172672
OHMY01029824
[OHMY] human gut metagenome; feces
65
140
+
Phe
GAA
[ENA]
¢þ
>WENV182180632
OHNO01004625
[OHNO] human gut metagenome; feces
3600
3525
-
Phe
GAA
[ENA]
¢þ
>WENV182216034
OHQM01013743
[OHQM] human gut metagenome; feces
1032
957
-
Phe
GAA
[ENA]
¢þ
>WENV182537978
OIXH01028019
[OIXH] human gut metagenome; faeces
1878
1953
+
Phe
GAA
[ENA]
¢þ
>WENV183039652
OLGB01011383
[OLGB] human gut metagenome; faeces
2662
2587
-
Phe
GAA
[ENA]
¢þ
>W141452028
JFBR01000002
Synergistota
Cloacibacillus evryensis DSM 19522 [JFBR]
209234
209309
+
Phe
GAA
[ENA]
¡û
>W121000484
ACUH01000050
Synergistota
Synergistes sp. 3_1_syn1 [ACUH]
10306
10381
+
Phe
GAA
[ENA]
¡û
>W121000486
ACUH01000050
Synergistota
Synergistes sp. 3_1_syn1 [ACUH]
10617
10692
+
Phe
GAA
[ENA]
¡û
>W1610948733
LVBQ01000027
Synergistota
Synergistales bacterium Syner_03 [LVBQ]
30797
30872
+
Phe
GAA
[ENA]
¡û
Identical group No.490520 (2 seq.)
>W1711629538
MPPC01000004
Synergistota
Aminobacterium sp. EBM-42 [MPPC]
80671
80596
-
Phe
GAA
[ENA]
¡û
>C10100298
CP001997
Synergistota
Aminobacterium colombiense DSM 12261 [CP001997]
337231
337306
+
Phe
GAA
[Ensembl]
¡û
Identical group No.491397 (7 seq.)
>W141701185
JMKI01000002
Synergistota
Synergistes jonesii [JMKI]
14702
14777
+
Phe
GAA
[ENA]
¡û
>W121031612
AHGV01000001
Synergistota
Thermanaerovibrio velox DSM 12556 [AHGV]
297231
297306
+
Phe
GAA
[ENA]
¡û
>W1710629228
JPZQ01000001
Synergistota
Synergistes jonesii [JPZQ]
12659
12734
+
Phe
GAA
[ENA]
¡û
>W1710629271
JPZR01000001
Synergistota
Synergistes jonesii [JPZR]
12659
12734
+
Phe
GAA
[ENA]
¡û
>W1710629314
JPZS01000001
Synergistota
Synergistes jonesii [JPZS]
12659
12734
+
Phe
GAA
[ENA]
¡û
>W1710631854
JQEK01000047
Synergistota
Synergistes jonesii [JQEK]
172166
172091
-
Phe
GAA
[ENA]
¡û
>W1710631862
JQEL01000001
Synergistota
Synergistes jonesii [JQEL]
12659
12734
+
Phe
GAA
[ENA]
¡û
Identical group No.495398 (10 seq.)
>W1711137579
LVBO01000648
Synergistota
Synergistales bacterium Syner_01 [LVBO]
1598
1673
+
Phe
GAA
[ENA]
¡û
>WENV180731896
ODGW01031308
[ODGW] human metagenome; G_DNA_Supragingival plaque
156
81
-
Phe
GAA
[ENA]
¢þ
>WENV180735334
ODGZ01160172
[ODGZ] human metagenome; G_DNA_Supragingival plaque
159
234
+
Phe
GAA
[ENA]
¢þ
>WENV180751904
ODHS01264406
[ODHS] human metagenome; G_DNA_Supragingival plaque
99
24
-
Phe
GAA
[ENA]
¢þ
>WENV180944645
ODUC01027292
[ODUC] human metagenome; G_DNA_Supragingival plaque
310
385
+
Phe
GAA
[ENA]
¢þ
>WENV180982199
ODVE01207816
[ODVE] human metagenome; G_DNA_Supragingival plaque
194
119
-
Phe
GAA
[ENA]
¢þ
>WENV181050711
ODYD01045969
[ODYD] human metagenome; G_DNA_Supragingival plaque
328
403
+
Phe
GAA
[ENA]
¢þ
>WENV181077625
OEAP01093315
[OEAP] human metagenome; G_DNA_Supragingival plaque
177
252
+
Phe
GAA
[ENA]
¢þ
>WENV181182926
OEJV01079106
[OEJV] human metagenome; G_DNA_Supragingival plaque
325
400
+
Phe
GAA
[ENA]
¢þ
>W1610948699
LVBO01000648
Synergistota
Synergistales bacterium Syner_01 [LVBO]
1598
1673
+
Phe
GAA
[ENA]
¡û
Identical group No.538077 (1 seq.)
>C161104049
FP929056
Synergistota
Fretibacterium fastidiosum SGP1 [FP929056]
945335
945260
-
Phe
GAA
-
¡û
Identical group No.541235 (1 seq.)
>W11300462
ADFP01000084
Synergistota
Pyramidobacter piscolens W5455 [ADFP]
4947
5022
+
Phe
GAA
[ENA]
¡û
Identical group No.541395 (1 seq.)
>W11138619
AEIV01000002
Synergistota
Aminomonas paucivorans DSM 12260 [AEIV]
707382
707307
-
Phe
GAA
[ENA]
¡û
Identical group No.553405 (3 seq.)
>W141146851
AWWC01000018
Synergistota
Jonquetella sp. BV3C21 [AWWC]
46287
46362
+
Phe
GAA
[ENA]
¡û
>W09132953
ACOO02000017
Synergistota
Jonquetella anthropi E3_33 E1 [ACOO]
46520
46595
+
Phe
GAA
[ENA]
¡û
>W121017480
AGRU01000003
Synergistota
Jonquetella anthropi DSM 22815 [AGRU]
51259
51334
+
Phe
GAA
[ENA]
¡û
Identical group No.565201 (1 seq.)
>W131157317
AQRZ01000027
Synergistota
Synergistetes bacterium JGI 0000079-D21 [AQRZ]
1116
1041
-
Phe
GAA
[ENA]
¡û
Identical group No.601733 (3 seq.)
>WENV170655929
JTFN01097194
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
344
269
-
Phe
GAA
[ENA]
¢þ
>WENV170656587
JTFO01026602
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
15
90
+
Phe
GAA
[ENA]
¢þ
>W1710608704
FXBB01000019
Synergistota
Dethiosulfovibrio salsuginis [FXBB]
5541
5616
+
Phe
GAA
[ENA]
¡û
Identical group No.620676 (2 seq.)
>W141278943
JAFY01000005
Synergistota
Aminiphilus circumscriptus DSM 16581 [JAFY]
427540
427465
-
Phe
GAA
[ENA]
¡û
>W1610945996
LUYG01000291
Euryarchaeota
Methanosarcinales archaeon Methan_03 [LUYG]
844
769
-
Phe
GAA
[ENA]
¡û
Identical group No.621929 (1 seq.)
>W09108893
ABTR01000001
Synergistota
Dethiosulfovibrio peptidovorans DSM 11002 [ABTR]
416866
416791
-
Phe
GAA
[ENA]
¡û
Identical group No.621930 (3 seq.)
>WENV181409529
OGCI01000259
[OGCI] hot springs metagenome; Hot spring water
56980
56905
-
Phe
GAA
[ENA]
¢þ
>W09110115
ABUW01000002
Synergistota
Thermanaerovibrio acidaminovorans DSM 6589 [ABUW]
10797
10872
+
Phe
GAA
[ENA]
¡û
>C10112999
CP001818
Synergistota
Thermanaerovibrio acidaminovorans DSM 6589 [CP001818]
1573238
1573163
-
Phe
GAA
[Ensembl]
¡û
Identical group No.641281 (1 seq.)
>C121005672
CP003096
Synergistota
Thermovirga lienii DSM 17291 [CP003096]
484223
484298
+
Phe
GAA
[Ensembl]
¡û
Identical group No.642162 (1 seq.)
>W141279028
JAFZ01000004
Synergistota
Aminobacterium mobile DSM 12262 [JAFZ]
84865
84790
-
Phe
GAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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