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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Synergistota
Anticodon = GAC
HIT:
7 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.704963 (1 seq.)
>C161104025
FP929056
Synergistota
Fretibacterium fastidiosum SGP1 [FP929056]
899792
899866
+
Val
GAC
-
¡û
Identical group No.706864 (1 seq.)
>W11138615
AEIV01000002
Synergistota
Aminomonas paucivorans DSM 12260 [AEIV]
96106
96180
+
Val
GAC
[ENA]
¡û
Identical group No.713155 (2 seq.)
>W1711137555
LVBO01000042
Synergistota
Synergistales bacterium Syner_01 [LVBO]
3731
3805
+
Val
GAC
[ENA]
¡û
>W1610948675
LVBO01000042
Synergistota
Synergistales bacterium Syner_01 [LVBO]
3731
3805
+
Val
GAC
[ENA]
¡û
Identical group No.714274 (3 seq.)
>W141146875
AWWC01000028
Synergistota
Jonquetella sp. BV3C21 [AWWC]
31009
30935
-
Val
GAC
[ENA]
¡û
>W09132963
ACOO02000018
Synergistota
Jonquetella anthropi E3_33 E1 [ACOO]
88098
88172
+
Val
GAC
[ENA]
¡û
>W121017487
AGRU01000003
Synergistota
Jonquetella anthropi DSM 22815 [AGRU]
207394
207468
+
Val
GAC
[ENA]
¡û
Identical group No.757415 (2 seq.)
>W09108922
ABTR01000003
Synergistota
Dethiosulfovibrio peptidovorans DSM 11002 [ABTR]
222005
221931
-
Val
GAC
[ENA]
¡û
>W09108923
ABTR01000003
Synergistota
Dethiosulfovibrio peptidovorans DSM 11002 [ABTR]
221897
221823
-
Val
GAC
[ENA]
¡û
Identical group No.772430 (1 seq.)
>W141279009
JAFZ01000001
Synergistota
Aminobacterium mobile DSM 12262 [JAFZ]
1354681
1354607
-
Val
GAC
[ENA]
¡û
Identical group No.772433 (1 seq.)
>W141452043
JFBR01000002
Synergistota
Cloacibacillus evryensis DSM 19522 [JFBR]
519741
519667
-
Val
GAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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