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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Synergistota
Anticodon = GCA
HIT:
5 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.789123 (1 seq.)
>W1712039392
NFJQ01000012
Synergistota
Cloacibacillus sp. An23 [NFJQ]
66923
66850
-
Cys
GCA
[ENA]
¡û
Identical group No.789900 (6 seq.)
>W141701197
JMKI01000026
Synergistota
Synergistes jonesii [JMKI]
70207
70280
+
Cys
GCA
[ENA]
¡û
>W1710629240
JPZQ01000030
Synergistota
Synergistes jonesii [JPZQ]
69415
69488
+
Cys
GCA
[ENA]
¡û
>W1710629284
JPZR01000022
Synergistota
Synergistes jonesii [JPZR]
69069
69142
+
Cys
GCA
[ENA]
¡û
>W1710629326
JPZS01000024
Synergistota
Synergistes jonesii [JPZS]
69069
69142
+
Cys
GCA
[ENA]
¡û
>W1710631846
JQEK01000046
Synergistota
Synergistes jonesii [JQEK]
69070
69143
+
Cys
GCA
[ENA]
¡û
>W1710631874
JQEL01000027
Synergistota
Synergistes jonesii [JQEL]
69069
69142
+
Cys
GCA
[ENA]
¡û
Identical group No.810113 (1 seq.)
>W131157319
AQRZ01000027
Synergistota
Synergistetes bacterium JGI 0000079-D21 [AQRZ]
934
861
-
Cys
GCA
[ENA]
¡û
Identical group No.833898 (1 seq.)
>C121005674
CP003096
Synergistota
Thermovirga lienii DSM 17291 [CP003096]
484399
484472
+
Cys
GCA
[Ensembl]
¡û
Identical group No.834119 (1 seq.)
>W141279030
JAFZ01000004
Synergistota
Aminobacterium mobile DSM 12262 [JAFZ]
84684
84611
-
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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