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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Synergistota
Anticodon = GCA
HIT:
15 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.656661 (10 seq.)
>W1711410071
MGPO01000063
Unclassified
Deltaproteobacteria bacterium GWA2_65_63 [MGPO]
78072
78146
+
Cys
GCA
[ENA]
¡û
>W1711410161
MGPR01000023
Unclassified
Deltaproteobacteria bacterium GWB2_65_81 [MGPR]
81298
81372
+
Cys
GCA
[ENA]
¡û
>W1711410353
MGPW01000102
Unclassified
Deltaproteobacteria bacterium GWC2_66_88 [MGPW]
275
349
+
Cys
GCA
[ENA]
¡û
>W1711411047
MGQX01000006
Unclassified
Deltaproteobacteria bacterium RBG_16_66_15 [MGQX]
40620
40694
+
Cys
GCA
[ENA]
¡û
>WENV180331365
OBLA01016205
[OBLA] soil metagenome; Alaskan Permafrost
244
170
-
Cys
GCA
[ENA]
¢þ
>W141278945
JAFY01000005
Synergistota
Aminiphilus circumscriptus DSM 16581 [JAFY]
427362
427288
-
Cys
GCA
[ENA]
¡û
>WENV183515660
OMKS01080849
[OMKS] sediment metagenome; hot spring sediment
1042
968
-
Cys
GCA
[ENA]
¢þ
>WENV183662150
ORJL010169427
[ORJL] groundwater metagenome; groundwater
417
491
+
Cys
GCA
[ENA]
¢þ
>WENV183793156
PQDT01011010
[PQDT] marine sediment metagenome; marine sediment
665
591
-
Cys
GCA
[ENA]
¢þ
>W1610945998
LUYG01000291
Euryarchaeota
Methanosarcinales archaeon Methan_03 [LUYG]
666
592
-
Cys
GCA
[ENA]
¡û
Identical group No.673448 (6 seq.)
>WENV170008230
AMZC01005281
[AMZC] bioreactor sludge metagenome; anaerobic thermophilic cellulolytic sludge from lab reactor
1528
1602
+
Cys
GCA
[ENA]
¢þ
>WENV170563778
CZCB01028987
[CZCB] anaerobic digester metagenome; anaerobic digester
6930
6856
-
Cys
GCA
[ENA]
¢þ
>W09126631
ACJX01000176
Synergistota
Acetomicrobium hydrogeniformans ATCC BAA-1850 [ACJX]
14824
14750
-
Cys
GCA
[ENA]
¡û
>C121008050
CP003198
Synergistota
Acetomicrobium mobile DSM 13181 [CP003198]
217109
217183
+
Cys
GCA
[Ensembl]
¡û
>W1710530853
FNPD01000014
Synergistota
Acetomicrobium thermoterrenum DSM 13490 [FNPD]
32395
32321
-
Cys
GCA
[ENA]
¡û
>W1710594079
FSQZ01000001
Synergistota
Acetomicrobium flavidum [FSQZ]
854621
854547
-
Cys
GCA
[ENA]
¡û
Identical group No.684040 (3 seq.)
>WENV170676943
LDZS01003283
[LDZS] terrestrial metagenome; oil reservoir sample K3
4530
4604
+
Cys
GCA
[ENA]
¢þ
>W1610613311
LGFQ01000103
Synergistota
Synergistales bacterium 54_24 [LGFQ]
4530
4604
+
Cys
GCA
[ENA]
¡û
>W1710734518
LGFQ01000103
Synergistota
Synergistales bacterium 54_24 [LGFQ]
4530
4604
+
Cys
GCA
[ENA]
¡û
Identical group No.719224 (3 seq.)
>WENV180352391
OBLQ010241235
[OBLQ] soil metagenome; soil
452
526
+
Cys
GCA
[ENA]
¢þ
>WENV170689743
LFRM01309344
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
890
816
-
Cys
GCA
[ENA]
¢þ
>W121031614
AHGV01000001
Synergistota
Thermanaerovibrio velox DSM 12556 [AHGV]
297420
297494
+
Cys
GCA
[ENA]
¡û
Identical group No.757421 (3 seq.)
>WENV181409531
OGCI01000259
[OGCI] hot springs metagenome; Hot spring water
56798
56724
-
Cys
GCA
[ENA]
¢þ
>W09110117
ABUW01000002
Synergistota
Thermanaerovibrio acidaminovorans DSM 6589 [ABUW]
10979
11053
+
Cys
GCA
[ENA]
¡û
>C10113001
CP001818
Synergistota
Thermanaerovibrio acidaminovorans DSM 6589 [CP001818]
1573056
1572982
-
Cys
GCA
[Ensembl]
¡û
Identical group No.781830 (16 seq.)
>W1711629540
MPPC01000004
Synergistota
Aminobacterium sp. EBM-42 [MPPC]
80489
80416
-
Cys
GCA
[ENA]
¡û
>WENV181230278
OFEK01000582
[OFEK] activated sludge metagenome; Anaerobic digester
25449
25522
+
Cys
GCA
[ENA]
¢þ
>WENV183514101
OMKS01011869
[OMKS] sediment metagenome; hot spring sediment
4226
4153
-
Cys
GCA
[ENA]
¢þ
>WENV170655931
JTFN01097194
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
185
112
-
Cys
GCA
[ENA]
¢þ
>WENV170656589
JTFO01026602
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
174
247
+
Cys
GCA
[ENA]
¢þ
>WENV170968679
MTKW01012995
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
204
131
-
Cys
GCA
[ENA]
¢þ
>WENV170974162
MTKY01054733
[MTKY] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
19517
19590
+
Cys
GCA
[ENA]
¢þ
>W09108895
ABTR01000001
Synergistota
Dethiosulfovibrio peptidovorans DSM 11002 [ABTR]
416700
416627
-
Cys
GCA
[ENA]
¡û
>W1911137510
NOWF01000018
Bacillota
Paludifilum halophilum DSM 102817 [NOWF]
1083
1156
+
Cys
GCA
[ENA]
¡û
>W1810356774
PVNE01000011
Bacillota
Planifilum fimeticola DSM 44946 [PVNE]
68536
68463
-
Cys
GCA
[ENA]
¡û
>W1810504209
QBKR01000057
Bacillota
Melghirimyces profundicolus DSM 45787 [QBKR]
2109
2036
-
Cys
GCA
[ENA]
¡û
>C10100300
CP001997
Synergistota
Aminobacterium colombiense DSM 12261 [CP001997]
337413
337486
+
Cys
GCA
[Ensembl]
¡û
>W1710511937
FMZA01000006
Bacillota
Melghirimyces thermohalophilus [FMZA]
1624
1697
+
Cys
GCA
[ENA]
¡û
>W1710528978
FNNQ01000015
Bacillota
Marininema mesophilum [FNNQ]
68006
67933
-
Cys
GCA
[ENA]
¡û
>W1710561795
FOOK01000031
Bacillota
Planifilum fulgidum [FOOK]
15440
15367
-
Cys
GCA
[ENA]
¡û
>W1710608706
FXBB01000019
Synergistota
Dethiosulfovibrio salsuginis [FXBB]
5700
5773
+
Cys
GCA
[ENA]
¡û
Identical group No.785080 (14 seq.)
>C171050551
CP016757
Synergistota
Cloacibacillus porcorum CL-84 [CP016757]
2417433
2417506
+
Cys
GCA
-
¡û
>WENV181908614
OGYB01000180
[OGYB] human gut metagenome; faeces
38122
38195
+
Cys
GCA
[ENA]
¢þ
>WENV181915032
OGYF01002463
[OGYF] human gut metagenome; faeces
13494
13421
-
Cys
GCA
[ENA]
¢þ
>WENV182031407
OHCS01017257
[OHCS] human gut metagenome; feces
379
306
-
Cys
GCA
[ENA]
¢þ
>WENV182172479
OHMY01008679
[OHMY] human gut metagenome; feces
677
750
+
Cys
GCA
[ENA]
¢þ
>WENV182180469
OHNO01001234
[OHNO] human gut metagenome; feces
8209
8136
-
Cys
GCA
[ENA]
¢þ
>WENV182212776
OHQG01006861
[OHQG] human gut metagenome; feces
1099
1172
+
Cys
GCA
[ENA]
¢þ
>WENV182221106
OHQS01051036
[OHQS] human gut metagenome; feces
29
102
+
Cys
GCA
[ENA]
¢þ
>WENV182538022
OIXH01031579
[OIXH] human gut metagenome; faeces
1160
1087
-
Cys
GCA
[ENA]
¢þ
>WENV182892203
OKSH01033717
[OKSH] human gut metagenome; faeces
851
778
-
Cys
GCA
[ENA]
¢þ
>WENV183038591
OLGB01000810
[OLGB] human gut metagenome; faeces
18752
18679
-
Cys
GCA
[ENA]
¢þ
>WENV183484452
OMFO01054262
[OMFO] human gut metagenome; feces
432
505
+
Cys
GCA
[ENA]
¢þ
>W141452033
JFBR01000002
Synergistota
Cloacibacillus evryensis DSM 19522 [JFBR]
1086546
1086619
+
Cys
GCA
[ENA]
¡û
>W121000505
ACUH01000059
Synergistota
Synergistes sp. 3_1_syn1 [ACUH]
203615
203688
+
Cys
GCA
[ENA]
¡û
Identical group No.789123 (1 seq.)
>W1712039392
NFJQ01000012
Synergistota
Cloacibacillus sp. An23 [NFJQ]
66923
66850
-
Cys
GCA
[ENA]
¡û
Identical group No.789900 (6 seq.)
>W141701197
JMKI01000026
Synergistota
Synergistes jonesii [JMKI]
70207
70280
+
Cys
GCA
[ENA]
¡û
>W1710629240
JPZQ01000030
Synergistota
Synergistes jonesii [JPZQ]
69415
69488
+
Cys
GCA
[ENA]
¡û
>W1710629284
JPZR01000022
Synergistota
Synergistes jonesii [JPZR]
69069
69142
+
Cys
GCA
[ENA]
¡û
>W1710629326
JPZS01000024
Synergistota
Synergistes jonesii [JPZS]
69069
69142
+
Cys
GCA
[ENA]
¡û
>W1710631846
JQEK01000046
Synergistota
Synergistes jonesii [JQEK]
69070
69143
+
Cys
GCA
[ENA]
¡û
>W1710631874
JQEL01000027
Synergistota
Synergistes jonesii [JQEL]
69069
69142
+
Cys
GCA
[ENA]
¡û
Identical group No.792905 (7 seq.)
>WENV180797871
ODJB01151405
[ODJB] human metagenome; G_DNA_Supragingival plaque
207
134
-
Cys
GCA
[ENA]
¢þ
>WENV180809836
ODJK01055866
[ODJK] human metagenome; G_DNA_Subgingival plaque
9
82
+
Cys
GCA
[ENA]
¢þ
>WENV170562185
CZCB01001319
[CZCB] anaerobic digester metagenome; anaerobic digester
105547
105474
-
Cys
GCA
[ENA]
¢þ
>WENV170691106
LFRM01380412
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
105565
105492
-
Cys
GCA
[ENA]
¢þ
>C161104052
FP929056
Synergistota
Fretibacterium fastidiosum SGP1 [FP929056]
831505
831432
-
Cys
GCA
-
¡û
>W1610606673
LFTC01000079
Bacillota
Clostridiales bacterium DTU083 [LFTC]
105565
105492
-
Cys
GCA
[ENA]
¡û
>W1710727960
LFTC01000079
Bacillota
Clostridiales bacterium DTU083 [LFTC]
105565
105492
-
Cys
GCA
[ENA]
¡û
Identical group No.794814 (3 seq.)
>WENV170972403
MTKX01029124
[MTKX] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
21350
21423
+
Cys
GCA
[ENA]
¢þ
>WENV170976296
MTKZ01006422
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
135732
135805
+
Cys
GCA
[ENA]
¢þ
>W11138621
AEIV01000002
Synergistota
Aminomonas paucivorans DSM 12260 [AEIV]
707200
707127
-
Cys
GCA
[ENA]
¡û
Identical group No.796626 (25 seq.)
>W1711137581
LVBO01000648
Synergistota
Synergistales bacterium Syner_01 [LVBO]
1787
1860
+
Cys
GCA
[ENA]
¡û
>W1711137627
LVBQ01000067
Synergistota
Synergistales bacterium Syner_03 [LVBQ]
23786
23859
+
Cys
GCA
[ENA]
¡û
>W1711744512
MUHX01000030
Synergistota
Pyramidobacter sp. C12-8 [MUHX]
5168
5241
+
Cys
GCA
[ENA]
¡û
>WENV180098190
MTBK01232328
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
5191
5264
+
Cys
GCA
[ENA]
¢þ
>WENV180729181
ODGU01239862
[ODGU] human metagenome; G_DNA_Supragingival plaque
149
222
+
Cys
GCA
[ENA]
¢þ
>WENV180751559
ODHS01072676
[ODHS] human metagenome; G_DNA_Supragingival plaque
114
41
-
Cys
GCA
[ENA]
¢þ
>WENV180943707
ODUC01001890
[ODUC] human metagenome; G_DNA_Supragingival plaque
112
39
-
Cys
GCA
[ENA]
¢þ
>WENV180952267
ODUH01198062
[ODUH] human metagenome; G_DNA_Subgingival plaque
129
56
-
Cys
GCA
[ENA]
¢þ
>WENV181051221
ODYD01278316
[ODYD] human metagenome; G_DNA_Supragingival plaque
114
41
-
Cys
GCA
[ENA]
¢þ
>WENV181077690
OEAP01108658
[OEAP] human metagenome; G_DNA_Supragingival plaque
330
403
+
Cys
GCA
[ENA]
¢þ
>WENV181080852
OEAS01090247
[OEAS] human metagenome; G_DNA_Supragingival plaque
706
779
+
Cys
GCA
[ENA]
¢þ
>WENV181091772
OEBC01087931
[OEBC] human metagenome; G_DNA_Supragingival plaque
469
396
-
Cys
GCA
[ENA]
¢þ
>WENV181182705
OEJV01031192
[OEJV] human metagenome; G_DNA_Supragingival plaque
381
454
+
Cys
GCA
[ENA]
¢þ
>W141146853
AWWC01000018
Synergistota
Jonquetella sp. BV3C21 [AWWC]
46452
46525
+
Cys
GCA
[ENA]
¡û
>WENV181973516
OHAA01072575
[OHAA] human gut metagenome; faeces
480
407
-
Cys
GCA
[ENA]
¢þ
>WENV181989725
OHAO01036176
[OHAO] human gut metagenome; faeces
988
915
-
Cys
GCA
[ENA]
¢þ
>WENV183763931
PPYE01311245
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
259
332
+
Cys
GCA
[ENA]
¢þ
>WENV170684594
LFRM01047651
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
2695
2622
-
Cys
GCA
[ENA]
¢þ
>WENV170974274
MTKY01056430
[MTKY] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
5122
5195
+
Cys
GCA
[ENA]
¢þ
>W09132955
ACOO02000017
Synergistota
Jonquetella anthropi E3_33 E1 [ACOO]
46685
46758
+
Cys
GCA
[ENA]
¡û
>W10113036
ADFP01000084
Synergistota
Pyramidobacter piscolens W5455 [ADFP]
5123
5196
+
Cys
GCA
[ENA]
¡û
>W11116263
ADFP01000084
Synergistota
Pyramidobacter piscolens W5455 [ADFP]
5123
5196
+
Cys
GCA
[ENA]
¡û
>W121017482
AGRU01000003
Synergistota
Jonquetella anthropi DSM 22815 [AGRU]
51424
51497
+
Cys
GCA
[ENA]
¡û
>W1610948701
LVBO01000648
Synergistota
Synergistales bacterium Syner_01 [LVBO]
1787
1860
+
Cys
GCA
[ENA]
¡û
>W1610948747
LVBQ01000067
Synergistota
Synergistales bacterium Syner_03 [LVBQ]
23786
23859
+
Cys
GCA
[ENA]
¡û
Identical group No.810113 (1 seq.)
>W131157319
AQRZ01000027
Synergistota
Synergistetes bacterium JGI 0000079-D21 [AQRZ]
934
861
-
Cys
GCA
[ENA]
¡û
Identical group No.833898 (1 seq.)
>C121005674
CP003096
Synergistota
Thermovirga lienii DSM 17291 [CP003096]
484399
484472
+
Cys
GCA
[Ensembl]
¡û
Identical group No.834119 (1 seq.)
>W141279030
JAFZ01000004
Synergistota
Aminobacterium mobile DSM 12262 [JAFZ]
84684
84611
-
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK