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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Synergistota
Anticodon = GCC
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.714279 (6 seq.)
>W141146833
AWWC01000003
Synergistota
Jonquetella sp. BV3C21 [AWWC]
53003
52929
-
Gly
GCC
[ENA]
¡û
>W141146852
AWWC01000018
Synergistota
Jonquetella sp. BV3C21 [AWWC]
46376
46450
+
Gly
GCC
[ENA]
¡û
>W09132948
ACOO02000004
Synergistota
Jonquetella anthropi E3_33 E1 [ACOO]
178272
178198
-
Gly
GCC
[ENA]
¡û
>W09132954
ACOO02000017
Synergistota
Jonquetella anthropi E3_33 E1 [ACOO]
46609
46683
+
Gly
GCC
[ENA]
¡û
>W121017475
AGRU01000001
Synergistota
Jonquetella anthropi DSM 22815 [AGRU]
51789
51715
-
Gly
GCC
[ENA]
¡û
>W121017481
AGRU01000003
Synergistota
Jonquetella anthropi DSM 22815 [AGRU]
51348
51422
+
Gly
GCC
[ENA]
¡û
Identical group No.727338 (3 seq.)
>W1711137614
LVBQ01000027
Synergistota
Synergistales bacterium Syner_03 [LVBQ]
30894
30968
+
Gly
GCC
[ENA]
¡û
>C121005673
CP003096
Synergistota
Thermovirga lienii DSM 17291 [CP003096]
484313
484387
+
Gly
GCC
[Ensembl]
¡û
>W1610948734
LVBQ01000027
Synergistota
Synergistales bacterium Syner_03 [LVBQ]
30894
30968
+
Gly
GCC
[ENA]
¡û
Identical group No.728122 (4 seq.)
>C173000808
CP016757
Synergistota
Cloacibacillus porcorum CL-84 [CP016757]
1584310
1584384
+
Gly
GCC
-
¡û
>W143011530
JFBR01000002
Synergistota
Cloacibacillus evryensis DSM 19522 [JFBR]
209336
209410
+
Gly
GCC
[ENA]
¡û
>W123000011
ACUH01000050
Synergistota
Synergistes sp. 3_1_syn1 [ACUH]
10400
10474
+
Gly
GCC
[ENA]
¡û
>W123000012
ACUH01000050
Synergistota
Synergistes sp. 3_1_syn1 [ACUH]
10719
10793
+
Gly
GCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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