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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Synergistota
Anticodon = GGC
HIT:
5 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.488000 (1 seq.)
>W1712039370
NFJQ01000006
Synergistota
Cloacibacillus sp. An23 [NFJQ]
138475
138400
-
Ala
GGC
[ENA]
¡û
Identical group No.490521 (2 seq.)
>W1711629563
MPPC01000017
Synergistota
Aminobacterium sp. EBM-42 [MPPC]
83711
83786
+
Ala
GGC
[ENA]
¡û
>C10100304
CP001997
Synergistota
Aminobacterium colombiense DSM 12261 [CP001997]
595579
595654
+
Ala
GGC
[Ensembl]
¡û
Identical group No.491406 (1 seq.)
>W141701226
JMKI01000052
Synergistota
Synergistes jonesii [JMKI]
194
269
+
Ala
GGC
[ENA]
¡û
Identical group No.721550 (1 seq.)
>W131157324
AQRZ01000041
Synergistota
Synergistetes bacterium JGI 0000079-D21 [AQRZ]
4220
4294
+
Ala
GGC
[ENA]
¡û
Identical group No.762360 (1 seq.)
>W141278949
JAFY01000005
Synergistota
Aminiphilus circumscriptus DSM 16581 [JAFY]
221555
221481
-
Ala
GGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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