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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Synergistota
Anticodon = GGT
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.541234 (1 seq.)
>W11300461
ADFP01000074
Synergistota
Pyramidobacter piscolens W5455 [ADFP]
13059
12984
-
Thr
GGT
[ENA]
¡û
Identical group No.553402 (3 seq.)
>W141146836
AWWC01000006
Synergistota
Jonquetella sp. BV3C21 [AWWC]
39041
39116
+
Thr
GGT
[ENA]
¡û
>W09132990
ACOO02000037
Synergistota
Jonquetella anthropi E3_33 E1 [ACOO]
42397
42472
+
Thr
GGT
[ENA]
¡û
>W121017470
AGRU01000001
Synergistota
Jonquetella anthropi DSM 22815 [AGRU]
141814
141889
+
Thr
GGT
[ENA]
¡û
Identical group No.603106 (2 seq.)
>W1711137602
LVBP01000282
Synergistota
Synergistales bacterium Syner_02 [LVBP]
23448
23373
-
Thr
GGT
[ENA]
¡û
>W1610948722
LVBP01000282
Synergistota
Synergistales bacterium Syner_02 [LVBP]
23448
23373
-
Thr
GGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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