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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Synergistota
Anticodon = GTA
HIT:
8 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.157752 (2 seq.)
>C121008043
CP003198
Synergistota
Acetomicrobium mobile DSM 13181 [CP003198]
202376
202461
+
Tyr
GTA
[Ensembl]
¡û
>W1710594072
FSQZ01000001
Synergistota
Acetomicrobium flavidum [FSQZ]
874989
874904
-
Tyr
GTA
[ENA]
¡û
Identical group No.158485 (6 seq.)
>W141701194
JMKI01000016
Synergistota
Synergistes jonesii [JMKI]
2633
2718
+
Tyr
GTA
[ENA]
¡û
>W1710629237
JPZQ01000021
Synergistota
Synergistes jonesii [JPZQ]
1759
1844
+
Tyr
GTA
[ENA]
¡û
>W1710629281
JPZR01000016
Synergistota
Synergistes jonesii [JPZR]
1759
1844
+
Tyr
GTA
[ENA]
¡û
>W1710629323
JPZS01000016
Synergistota
Synergistes jonesii [JPZS]
1764
1849
+
Tyr
GTA
[ENA]
¡û
>W1710631840
JQEK01000044
Synergistota
Synergistes jonesii [JQEK]
12175
12090
-
Tyr
GTA
[ENA]
¡û
>W1710631871
JQEL01000019
Synergistota
Synergistes jonesii [JQEL]
1759
1844
+
Tyr
GTA
[ENA]
¡û
Identical group No.164861 (1 seq.)
>W11138625
AEIV01000002
Synergistota
Aminomonas paucivorans DSM 12260 [AEIV]
648969
648884
-
Tyr
GTA
[ENA]
¡û
Identical group No.166472 (3 seq.)
>W141146835
AWWC01000006
Synergistota
Jonquetella sp. BV3C21 [AWWC]
38952
39037
+
Tyr
GTA
[ENA]
¡û
>W09132989
ACOO02000037
Synergistota
Jonquetella anthropi E3_33 E1 [ACOO]
42308
42393
+
Tyr
GTA
[ENA]
¡û
>W121017469
AGRU01000001
Synergistota
Jonquetella anthropi DSM 22815 [AGRU]
141725
141810
+
Tyr
GTA
[ENA]
¡û
Identical group No.169275 (2 seq.)
>W09126633
ACJX01000177
Synergistota
Acetomicrobium hydrogeniformans ATCC BAA-1850 [ACJX]
751
666
-
Tyr
GTA
[ENA]
¡û
>W1710530845
FNPD01000012
Synergistota
Acetomicrobium thermoterrenum DSM 13490 [FNPD]
17278
17193
-
Tyr
GTA
[ENA]
¡û
Identical group No.176617 (1 seq.)
>W141278938
JAFY01000005
Synergistota
Aminiphilus circumscriptus DSM 16581 [JAFY]
463691
463606
-
Tyr
GTA
[ENA]
¡û
Identical group No.178435 (1 seq.)
>C121005667
CP003096
Synergistota
Thermovirga lienii DSM 17291 [CP003096]
470803
470888
+
Tyr
GTA
[Ensembl]
¡û
Identical group No.178516 (1 seq.)
>W141279023
JAFZ01000004
Synergistota
Aminobacterium mobile DSM 12262 [JAFZ]
103529
103444
-
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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