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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Synergistota
Anticodon = GTC
HIT:
7 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.253209 (1 seq.)
>W11138618
AEIV01000002
Synergistota
Aminomonas paucivorans DSM 12260 [AEIV]
707482
707405
-
Asp
GTC
[ENA]
¡û
Identical group No.302267 (1 seq.)
>W1710594076
FSQZ01000001
Synergistota
Acetomicrobium flavidum [FSQZ]
854909
854833
-
Asp
GTC
[ENA]
¡û
Identical group No.307530 (6 seq.)
>W141701184
JMKI01000002
Synergistota
Synergistes jonesii [JMKI]
14603
14679
+
Asp
GTC
[ENA]
¡û
>W1710629227
JPZQ01000001
Synergistota
Synergistes jonesii [JPZQ]
12560
12636
+
Asp
GTC
[ENA]
¡û
>W1710629270
JPZR01000001
Synergistota
Synergistes jonesii [JPZR]
12560
12636
+
Asp
GTC
[ENA]
¡û
>W1710629313
JPZS01000001
Synergistota
Synergistes jonesii [JPZS]
12560
12636
+
Asp
GTC
[ENA]
¡û
>W1710631853
JQEK01000047
Synergistota
Synergistes jonesii [JQEK]
172265
172189
-
Asp
GTC
[ENA]
¡û
>W1710631861
JQEL01000001
Synergistota
Synergistes jonesii [JQEL]
12560
12636
+
Asp
GTC
[ENA]
¡û
Identical group No.363255 (6 seq.)
>W141146832
AWWC01000003
Synergistota
Jonquetella sp. BV3C21 [AWWC]
53081
53005
-
Asp
GTC
[ENA]
¡û
>W141146850
AWWC01000018
Synergistota
Jonquetella sp. BV3C21 [AWWC]
46193
46269
+
Asp
GTC
[ENA]
¡û
>W09132947
ACOO02000004
Synergistota
Jonquetella anthropi E3_33 E1 [ACOO]
178350
178274
-
Asp
GTC
[ENA]
¡û
>W09132952
ACOO02000017
Synergistota
Jonquetella anthropi E3_33 E1 [ACOO]
46426
46502
+
Asp
GTC
[ENA]
¡û
>W121017474
AGRU01000001
Synergistota
Jonquetella anthropi DSM 22815 [AGRU]
51867
51791
-
Asp
GTC
[ENA]
¡û
>W121017479
AGRU01000003
Synergistota
Jonquetella anthropi DSM 22815 [AGRU]
51165
51241
+
Asp
GTC
[ENA]
¡û
Identical group No.381937 (2 seq.)
>W09126628
ACJX01000176
Synergistota
Acetomicrobium hydrogeniformans ATCC BAA-1850 [ACJX]
15122
15046
-
Asp
GTC
[ENA]
¡û
>W1710530850
FNPD01000014
Synergistota
Acetomicrobium thermoterrenum DSM 13490 [FNPD]
32693
32617
-
Asp
GTC
[ENA]
¡û
Identical group No.441163 (1 seq.)
>C121005671
CP003096
Synergistota
Thermovirga lienii DSM 17291 [CP003096]
484128
484204
+
Asp
GTC
[Ensembl]
¡û
Identical group No.441662 (1 seq.)
>W141279027
JAFZ01000004
Synergistota
Aminobacterium mobile DSM 12262 [JAFZ]
84965
84889
-
Asp
GTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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