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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Synergistota
Anticodon = GTG
HIT:
7 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.302268 (2 seq.)
>C121008060
CP003198
Synergistota
Acetomicrobium mobile DSM 13181 [CP003198]
697888
697964
+
His
GTG
[Ensembl]
¡û
>W1710594089
FSQZ01000001
Synergistota
Acetomicrobium flavidum [FSQZ]
376209
376133
-
His
GTG
[ENA]
¡û
Identical group No.304071 (1 seq.)
>W1712039382
NFJQ01000010
Synergistota
Cloacibacillus sp. An23 [NFJQ]
67645
67569
-
His
GTG
[ENA]
¡û
Identical group No.307536 (6 seq.)
>W141701220
JMKI01000047
Synergistota
Synergistes jonesii [JMKI]
18293
18217
-
His
GTG
[ENA]
¡û
>W1710629261
JPZQ01000056
Synergistota
Synergistes jonesii [JPZQ]
17463
17387
-
His
GTG
[ENA]
¡û
>W1710629302
JPZR01000046
Synergistota
Synergistes jonesii [JPZR]
17466
17390
-
His
GTG
[ENA]
¡û
>W1710629344
JPZS01000048
Synergistota
Synergistes jonesii [JPZS]
17463
17387
-
His
GTG
[ENA]
¡û
>W1710631830
JQEK01000023
Synergistota
Synergistes jonesii [JQEK]
17464
17388
-
His
GTG
[ENA]
¡û
>W1710631895
JQEL01000049
Synergistota
Synergistes jonesii [JQEL]
17464
17388
-
His
GTG
[ENA]
¡û
Identical group No.352499 (1 seq.)
>W11138611
AEIV01000002
Synergistota
Aminomonas paucivorans DSM 12260 [AEIV]
83396
83472
+
His
GTG
[ENA]
¡û
Identical group No.363252 (3 seq.)
>W141146864
AWWC01000020
Synergistota
Jonquetella sp. BV3C21 [AWWC]
15110
15186
+
His
GTG
[ENA]
¡û
>W09132973
ACOO02000025
Synergistota
Jonquetella anthropi E3_33 E1 [ACOO]
14292
14368
+
His
GTG
[ENA]
¡û
>W121017496
AGRU01000003
Synergistota
Jonquetella anthropi DSM 22815 [AGRU]
310853
310929
+
His
GTG
[ENA]
¡û
Identical group No.429601 (1 seq.)
>W1710608682
FXBB01000001
Synergistota
Dethiosulfovibrio salsuginis [FXBB]
100625
100549
-
His
GTG
[ENA]
¡û
Identical group No.430982 (1 seq.)
>W141278957
JAFY01000007
Synergistota
Aminiphilus circumscriptus DSM 16581 [JAFY]
428314
428390
+
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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