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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Synergistota
Anticodon = GTT
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.487998 (1 seq.)
>W1712039364
NFJQ01000004
Synergistota
Cloacibacillus sp. An23 [NFJQ]
218419
218344
-
Asn
GTT
[ENA]
¡û
Identical group No.491398 (6 seq.)
>W141701201
JMKI01000031
Synergistota
Synergistes jonesii [JMKI]
184269
184344
+
Asn
GTT
[ENA]
¡û
>W1710629242
JPZQ01000033
Synergistota
Synergistes jonesii [JPZQ]
183394
183469
+
Asn
GTT
[ENA]
¡û
>W1710629286
JPZR01000025
Synergistota
Synergistes jonesii [JPZR]
183387
183462
+
Asn
GTT
[ENA]
¡û
>W1710629328
JPZS01000027
Synergistota
Synergistes jonesii [JPZS]
183396
183471
+
Asn
GTT
[ENA]
¡û
>W1710631821
JQEK01000012
Synergistota
Synergistes jonesii [JQEK]
38977
38902
-
Asn
GTT
[ENA]
¡û
>W1710631876
JQEL01000030
Synergistota
Synergistes jonesii [JQEL]
183395
183470
+
Asn
GTT
[ENA]
¡û
Identical group No.541396 (2 seq.)
>W11138622
AEIV01000002
Synergistota
Aminomonas paucivorans DSM 12260 [AEIV]
707033
706958
-
Asn
GTT
[ENA]
¡û
>W11138623
AEIV01000002
Synergistota
Aminomonas paucivorans DSM 12260 [AEIV]
702352
702277
-
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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