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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Synergistota
Anticodon = TAA
HIT:
12 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.86045 (1 seq.)
>W141279006
JAFZ01000001
Synergistota
Aminobacterium mobile DSM 12262 [JAFZ]
1365515
1365427
-
Leu
TAA
[ENA]
¡û
Identical group No.107242 (1 seq.)
>W121031648
AHGV01000001
Synergistota
Thermanaerovibrio velox DSM 12556 [AHGV]
1000308
1000221
-
Leu
TAA
[ENA]
¡û
Identical group No.118717 (2 seq.)
>C121008064
CP003198
Synergistota
Acetomicrobium mobile DSM 13181 [CP003198]
803856
803942
+
Leu
TAA
[Ensembl]
¡û
>W1710594093
FSQZ01000001
Synergistota
Acetomicrobium flavidum [FSQZ]
285240
285154
-
Leu
TAA
[ENA]
¡û
Identical group No.119938 (6 seq.)
>W141701188
JMKI01000002
Synergistota
Synergistes jonesii [JMKI]
58256
58170
-
Leu
TAA
[ENA]
¡û
>W1710629231
JPZQ01000001
Synergistota
Synergistes jonesii [JPZQ]
56213
56127
-
Leu
TAA
[ENA]
¡û
>W1710629274
JPZR01000002
Synergistota
Synergistes jonesii [JPZR]
40769
40683
-
Leu
TAA
[ENA]
¡û
>W1710629317
JPZS01000001
Synergistota
Synergistes jonesii [JPZS]
56213
56127
-
Leu
TAA
[ENA]
¡û
>W1710631848
JQEK01000047
Synergistota
Synergistes jonesii [JQEK]
128574
128660
+
Leu
TAA
[ENA]
¡û
>W1710631865
JQEL01000001
Synergistota
Synergistes jonesii [JQEL]
56212
56126
-
Leu
TAA
[ENA]
¡û
Identical group No.130297 (1 seq.)
>W11138632
AEIV01000002
Synergistota
Aminomonas paucivorans DSM 12260 [AEIV]
229554
229468
-
Leu
TAA
[ENA]
¡û
Identical group No.132347 (2 seq.)
>W1711137572
LVBO01000428
Synergistota
Synergistales bacterium Syner_01 [LVBO]
2038
2124
+
Leu
TAA
[ENA]
¡û
>W1610948692
LVBO01000428
Synergistota
Synergistales bacterium Syner_01 [LVBO]
2038
2124
+
Leu
TAA
[ENA]
¡û
Identical group No.137129 (2 seq.)
>W09126603
ACJX01000117
Synergistota
Acetomicrobium hydrogeniformans ATCC BAA-1850 [ACJX]
26799
26713
-
Leu
TAA
[ENA]
¡û
>W1710530825
FNPD01000003
Synergistota
Acetomicrobium thermoterrenum DSM 13490 [FNPD]
249064
248978
-
Leu
TAA
[ENA]
¡û
Identical group No.146961 (1 seq.)
>W09108921
ABTR01000003
Synergistota
Dethiosulfovibrio peptidovorans DSM 11002 [ABTR]
234304
234218
-
Leu
TAA
[ENA]
¡û
Identical group No.148295 (1 seq.)
>W1710608671
FXBB01000001
Synergistota
Dethiosulfovibrio salsuginis [FXBB]
194380
194294
-
Leu
TAA
[ENA]
¡û
Identical group No.158023 (1 seq.)
>W1712039374
NFJQ01000008
Synergistota
Cloacibacillus sp. An23 [NFJQ]
85512
85427
-
Leu
TAA
[ENA]
¡û
Identical group No.213617 (1 seq.)
>W141278960
JAFY01000007
Synergistota
Aminiphilus circumscriptus DSM 16581 [JAFY]
435614
435698
+
Leu
TAA
[ENA]
¡û
Identical group No.223156 (3 seq.)
>W141146838
AWWC01000006
Synergistota
Jonquetella sp. BV3C21 [AWWC]
178569
178652
+
Leu
TAA
[ENA]
¡û
>W09132992
ACOO02000037
Synergistota
Jonquetella anthropi E3_33 E1 [ACOO]
196520
196603
+
Leu
TAA
[ENA]
¡û
>W121017472
AGRU01000001
Synergistota
Jonquetella anthropi DSM 22815 [AGRU]
294826
294909
+
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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