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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Synergistota
Anticodon = TAC
HIT:
5 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.706865 (1 seq.)
>W11138617
AEIV01000002
Synergistota
Aminomonas paucivorans DSM 12260 [AEIV]
707592
707518
-
Val
TAC
[ENA]
¡û
Identical group No.714273 (3 seq.)
>W141146849
AWWC01000018
Synergistota
Jonquetella sp. BV3C21 [AWWC]
46115
46189
+
Val
TAC
[ENA]
¡û
>W09132951
ACOO02000017
Synergistota
Jonquetella anthropi E3_33 E1 [ACOO]
46348
46422
+
Val
TAC
[ENA]
¡û
>W121017478
AGRU01000003
Synergistota
Jonquetella anthropi DSM 22815 [AGRU]
51087
51161
+
Val
TAC
[ENA]
¡û
Identical group No.757414 (1 seq.)
>W09108891
ABTR01000001
Synergistota
Dethiosulfovibrio peptidovorans DSM 11002 [ABTR]
417042
416968
-
Val
TAC
[ENA]
¡û
Identical group No.761590 (1 seq.)
>W1710608702
FXBB01000019
Synergistota
Dethiosulfovibrio salsuginis [FXBB]
5348
5422
+
Val
TAC
[ENA]
¡û
Identical group No.772061 (1 seq.)
>C121005670
CP003096
Synergistota
Thermovirga lienii DSM 17291 [CP003096]
484021
484095
+
Val
TAC
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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