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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Synergistota
Anticodon = TAG
HIT:
12 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.176397 (1 seq.)
>W1710608684
FXBB01000001
Synergistota
Dethiosulfovibrio salsuginis [FXBB]
100416
100331
-
Leu
TAG
[ENA]
¡û
Identical group No.196812 (1 seq.)
>W11138614
AEIV01000002
Synergistota
Aminomonas paucivorans DSM 12260 [AEIV]
83692
83776
+
Leu
TAG
[ENA]
¡û
Identical group No.211948 (1 seq.)
>W09108918
ABTR01000003
Synergistota
Dethiosulfovibrio peptidovorans DSM 11002 [ABTR]
123428
123512
+
Leu
TAG
[ENA]
¡û
Identical group No.215676 (1 seq.)
>W1711744496
MUHX01000010
Synergistota
Pyramidobacter sp. C12-8 [MUHX]
59457
59541
+
Leu
TAG
[ENA]
¡û
Identical group No.215953 (1 seq.)
>W141279005
JAFZ01000001
Synergistota
Aminobacterium mobile DSM 12262 [JAFZ]
1226268
1226352
+
Leu
TAG
[ENA]
¡û
Identical group No.219736 (2 seq.)
>C121008063
CP003198
Synergistota
Acetomicrobium mobile DSM 13181 [CP003198]
714016
714099
+
Leu
TAG
[Ensembl]
¡û
>W1710594092
FSQZ01000001
Synergistota
Acetomicrobium flavidum [FSQZ]
373727
373644
-
Leu
TAG
[ENA]
¡û
Identical group No.219814 (1 seq.)
>W1712039359
NFJQ01000002
Synergistota
Cloacibacillus sp. An23 [NFJQ]
177067
177150
+
Leu
TAG
[ENA]
¡û
Identical group No.219944 (6 seq.)
>W141701195
JMKI01000026
Synergistota
Synergistes jonesii [JMKI]
32926
33009
+
Leu
TAG
[ENA]
¡û
>W1710629238
JPZQ01000030
Synergistota
Synergistes jonesii [JPZQ]
32134
32217
+
Leu
TAG
[ENA]
¡û
>W1710629282
JPZR01000022
Synergistota
Synergistes jonesii [JPZR]
31788
31871
+
Leu
TAG
[ENA]
¡û
>W1710629324
JPZS01000024
Synergistota
Synergistes jonesii [JPZS]
31788
31871
+
Leu
TAG
[ENA]
¡û
>W1710631844
JQEK01000046
Synergistota
Synergistes jonesii [JQEK]
31789
31872
+
Leu
TAG
[ENA]
¡û
>W1710631872
JQEL01000027
Synergistota
Synergistes jonesii [JQEL]
31788
31871
+
Leu
TAG
[ENA]
¡û
Identical group No.222303 (1 seq.)
>C161104036
FP929056
Synergistota
Fretibacterium fastidiosum SGP1 [FP929056]
1845992
1845909
-
Leu
TAG
-
¡û
Identical group No.223155 (3 seq.)
>W141146866
AWWC01000020
Synergistota
Jonquetella sp. BV3C21 [AWWC]
15302
15385
+
Leu
TAG
[ENA]
¡û
>W09132975
ACOO02000025
Synergistota
Jonquetella anthropi E3_33 E1 [ACOO]
14484
14567
+
Leu
TAG
[ENA]
¡û
>W121017498
AGRU01000003
Synergistota
Jonquetella anthropi DSM 22815 [AGRU]
311045
311128
+
Leu
TAG
[ENA]
¡û
Identical group No.226422 (1 seq.)
>W121031635
AHGV01000001
Synergistota
Thermanaerovibrio velox DSM 12556 [AHGV]
866118
866201
+
Leu
TAG
[ENA]
¡û
Identical group No.232072 (1 seq.)
>W141278971
JAFY01000007
Synergistota
Aminiphilus circumscriptus DSM 16581 [JAFY]
697464
697546
+
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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