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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Synergistota
Anticodon = TCC
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.349174 (3 seq.)
>W141278981
JAFY01000007
Synergistota
Aminiphilus circumscriptus DSM 16581 [JAFY]
826597
826521
-
Gly
TCC
[ENA]
¡û
>W141278999
JAFZ01000001
Synergistota
Aminobacterium mobile DSM 12262 [JAFZ]
1222769
1222845
+
Gly
TCC
[ENA]
¡û
>C161104041
FP929056
Synergistota
Fretibacterium fastidiosum SGP1 [FP929056]
1116826
1116750
-
Gly
TCC
-
¡û
Identical group No.553412 (3 seq.)
>W141146862
AWWC01000020
Synergistota
Jonquetella sp. BV3C21 [AWWC]
14934
15009
+
Gly
TCC
[ENA]
¡û
>W09132971
ACOO02000025
Synergistota
Jonquetella anthropi E3_33 E1 [ACOO]
14116
14191
+
Gly
TCC
[ENA]
¡û
>W121017494
AGRU01000003
Synergistota
Jonquetella anthropi DSM 22815 [AGRU]
310677
310752
+
Gly
TCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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