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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Synergistota
Anticodon = TCG
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.541393 (1 seq.)
>W11138612
AEIV01000002
Synergistota
Aminomonas paucivorans DSM 12260 [AEIV]
83489
83564
+
Arg
TCG
[ENA]
¡û
Identical group No.554138 (3 seq.)
>W141146869
AWWC01000022
Synergistota
Jonquetella sp. BV3C21 [AWWC]
50754
50679
-
Arg
TCG
[ENA]
¡û
>W09132966
ACOO02000021
Synergistota
Jonquetella anthropi E3_33 E1 [ACOO]
3329
3404
+
Arg
TCG
[ENA]
¡û
>W121017490
AGRU01000003
Synergistota
Jonquetella anthropi DSM 22815 [AGRU]
242932
243007
+
Arg
TCG
[ENA]
¡û
Identical group No.629968 (1 seq.)
>W141278958
JAFY01000007
Synergistota
Aminiphilus circumscriptus DSM 16581 [JAFY]
428400
428475
+
Arg
TCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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