This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Synergistota
Anticodon = TCG
HIT:
11 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.306793 (3 seq.)
>W1711629555
MPPC01000010
Synergistota
Aminobacterium sp. EBM-42 [MPPC]
237441
237517
+
Arg
TCG
[ENA]
¡û
>WENV170719196
LSQX01104951
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
277181
277257
+
Arg
TCG
[ENA]
¢þ
>C10100333
CP001997
Synergistota
Aminobacterium colombiense DSM 12261 [CP001997]
986451
986375
-
Arg
TCG
[Ensembl]
¡û
Identical group No.318594 (4 seq.)
>WENV170676977
LDZS01003840
[LDZS] terrestrial metagenome; oil reservoir sample K3
7316
7240
-
Arg
TCG
[ENA]
¢þ
>C121005708
CP003096
Synergistota
Thermovirga lienii DSM 17291 [CP003096]
1130887
1130811
-
Arg
TCG
[Ensembl]
¡û
>W1610613339
LGFS01000002
Synergistota
Thermovirga lienii [LGFS]
7316
7240
-
Arg
TCG
[ENA]
¡û
>W1710734546
LGFS01000002
Synergistota
Thermovirga lienii [LGFS]
7316
7240
-
Arg
TCG
[ENA]
¡û
Identical group No.349177 (2 seq.)
>WENV181081798
OEAS01387852
[OEAS] human metagenome; G_DNA_Supragingival plaque
143
67
-
Arg
TCG
[ENA]
¢þ
>C161104044
FP929056
Synergistota
Fretibacterium fastidiosum SGP1 [FP929056]
1116562
1116486
-
Arg
TCG
-
¡û
Identical group No.406105 (2 seq.)
>W141279002
JAFZ01000001
Synergistota
Aminobacterium mobile DSM 12262 [JAFZ]
1223046
1223122
+
Arg
TCG
[ENA]
¡û
>WENV170656223
JTFO01004983
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
336
412
+
Arg
TCG
[ENA]
¢þ
Identical group No.486068 (18 seq.)
>WENV181312215
OFJB01056499
[OFJB] sludge metagenome; sludge
587
512
-
Arg
TCG
[ENA]
¢þ
>WENV170562120
CZCB01000996
[CZCB] anaerobic digester metagenome; anaerobic digester
2432
2357
-
Arg
TCG
[ENA]
¢þ
>WENV170676923
LDZS01003200
[LDZS] terrestrial metagenome; oil reservoir sample K3
19087
19012
-
Arg
TCG
[ENA]
¢þ
>WENV170677160
LDZT01003271
[LDZT] terrestrial metagenome; oil reservoir sample SB1
18078
18153
+
Arg
TCG
[ENA]
¢þ
>WENV170679049
LDZU01006790
[LDZU] terrestrial metagenome; oil reservoir sample SB2
8165
8240
+
Arg
TCG
[ENA]
¢þ
>WENV170689927
LFRM01318273
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
1548
1623
+
Arg
TCG
[ENA]
¢þ
>WENV170718519
LSQX01079659
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
680
755
+
Arg
TCG
[ENA]
¢þ
>WENV170724127
LSQX01294359
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
3190
3265
+
Arg
TCG
[ENA]
¢þ
>W09126611
ACJX01000142
Synergistota
Acetomicrobium hydrogeniformans ATCC BAA-1850 [ACJX]
8003
7928
-
Arg
TCG
[ENA]
¡û
>C121008061
CP003198
Synergistota
Acetomicrobium mobile DSM 13181 [CP003198]
707393
707468
+
Arg
TCG
[Ensembl]
¡û
>W1610613291
LGFQ01000020
Synergistota
Synergistales bacterium 54_24 [LGFQ]
19087
19012
-
Arg
TCG
[ENA]
¡û
>W1610613621
LGGB01000023
Synergistota
Synergistales bacterium 53_16 [LGGB]
18078
18153
+
Arg
TCG
[ENA]
¡û
>W1610614496
LGHG01000041
Synergistota
Synergistales bacterium 54_9 [LGHG]
8165
8240
+
Arg
TCG
[ENA]
¡û
>W1710530839
FNPD01000009
Synergistota
Acetomicrobium thermoterrenum DSM 13490 [FNPD]
87478
87403
-
Arg
TCG
[ENA]
¡û
>W1710594090
FSQZ01000001
Synergistota
Acetomicrobium flavidum [FSQZ]
374205
374130
-
Arg
TCG
[ENA]
¡û
>W1710734498
LGFQ01000020
Synergistota
Synergistales bacterium 54_24 [LGFQ]
19087
19012
-
Arg
TCG
[ENA]
¡û
>W1710734793
LGGB01000023
Synergistota
Synergistales bacterium 53_16 [LGGB]
18078
18153
+
Arg
TCG
[ENA]
¡û
>W1710735477
LGHG01000041
Synergistota
Synergistales bacterium 54_9 [LGHG]
8165
8240
+
Arg
TCG
[ENA]
¡û
Identical group No.504091 (6 seq.)
>WENV170678348
LDZT01014019
[LDZT] terrestrial metagenome; oil reservoir sample SB1
533
608
+
Arg
TCG
[ENA]
¢þ
>WENV170678611
LDZU01003376
[LDZU] terrestrial metagenome; oil reservoir sample SB2
550
625
+
Arg
TCG
[ENA]
¢þ
>W1610613700
LGGE01000012
Synergistota
Synergistales bacterium 57_84 [LGGE]
533
608
+
Arg
TCG
[ENA]
¡û
>W1610614149
LGGV01000001
Synergistota
Synergistales bacterium 58_81 [LGGV]
550
625
+
Arg
TCG
[ENA]
¡û
>W1710734853
LGGE01000012
Synergistota
Synergistales bacterium 57_84 [LGGE]
533
608
+
Arg
TCG
[ENA]
¡û
>W1710735232
LGGV01000001
Synergistota
Synergistales bacterium 58_81 [LGGV]
550
625
+
Arg
TCG
[ENA]
¡û
Identical group No.512696 (6 seq.)
>W1711137603
LVBP01000284
Synergistota
Synergistales bacterium Syner_02 [LVBP]
14278
14203
-
Arg
TCG
[ENA]
¡û
>WENV180096740
MTBK01144849
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
76161
76236
+
Arg
TCG
[ENA]
¢þ
>WENV180346589
OBLN01172302
[OBLN] sediment metagenome; sediment
104
179
+
Arg
TCG
[ENA]
¢þ
>WENV170724725
LSQX01316244
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
447
372
-
Arg
TCG
[ENA]
¢þ
>WENV170974036
MTKY01053109
[MTKY] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
2213
2288
+
Arg
TCG
[ENA]
¢þ
>W1610948723
LVBP01000284
Synergistota
Synergistales bacterium Syner_02 [LVBP]
14278
14203
-
Arg
TCG
[ENA]
¡û
Identical group No.541393 (1 seq.)
>W11138612
AEIV01000002
Synergistota
Aminomonas paucivorans DSM 12260 [AEIV]
83489
83564
+
Arg
TCG
[ENA]
¡û
Identical group No.554138 (3 seq.)
>W141146869
AWWC01000022
Synergistota
Jonquetella sp. BV3C21 [AWWC]
50754
50679
-
Arg
TCG
[ENA]
¡û
>W09132966
ACOO02000021
Synergistota
Jonquetella anthropi E3_33 E1 [ACOO]
3329
3404
+
Arg
TCG
[ENA]
¡û
>W121017490
AGRU01000003
Synergistota
Jonquetella anthropi DSM 22815 [AGRU]
242932
243007
+
Arg
TCG
[ENA]
¡û
Identical group No.614284 (4 seq.)
>WENV181409410
OGCI01000159
[OGCI] hot springs metagenome; Hot spring water
38539
38464
-
Arg
TCG
[ENA]
¢þ
>W09110137
ABUW01000004
Synergistota
Thermanaerovibrio acidaminovorans DSM 6589 [ABUW]
76100
76175
+
Arg
TCG
[ENA]
¡û
>C10112981
CP001818
Synergistota
Thermanaerovibrio acidaminovorans DSM 6589 [CP001818]
879721
879796
+
Arg
TCG
[Ensembl]
¡û
>W121031633
AHGV01000001
Synergistota
Thermanaerovibrio velox DSM 12556 [AHGV]
865932
866007
+
Arg
TCG
[ENA]
¡û
Identical group No.629968 (1 seq.)
>W141278958
JAFY01000007
Synergistota
Aminiphilus circumscriptus DSM 16581 [JAFY]
428400
428475
+
Arg
TCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK