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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Synergistota
Anticodon = TCT
HIT:
6 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.306791 (2 seq.)
>W1711629553
MPPC01000010
Synergistota
Aminobacterium sp. EBM-42 [MPPC]
237261
237337
+
Arg
TCT
[ENA]
¡û
>C10100331
CP001997
Synergistota
Aminobacterium colombiense DSM 12261 [CP001997]
986631
986555
-
Arg
TCT
[Ensembl]
¡û
Identical group No.352498 (1 seq.)
>W11138610
AEIV01000002
Synergistota
Aminomonas paucivorans DSM 12260 [AEIV]
83285
83361
+
Arg
TCT
[ENA]
¡û
Identical group No.363956 (3 seq.)
>W141146863
AWWC01000020
Synergistota
Jonquetella sp. BV3C21 [AWWC]
15017
15093
+
Arg
TCT
[ENA]
¡û
>W09132972
ACOO02000025
Synergistota
Jonquetella anthropi E3_33 E1 [ACOO]
14199
14275
+
Arg
TCT
[ENA]
¡û
>W121017495
AGRU01000003
Synergistota
Jonquetella anthropi DSM 22815 [AGRU]
310760
310836
+
Arg
TCT
[ENA]
¡û
Identical group No.417199 (1 seq.)
>W121031631
AHGV01000001
Synergistota
Thermanaerovibrio velox DSM 12556 [AHGV]
865741
865817
+
Arg
TCT
[ENA]
¡û
Identical group No.430981 (1 seq.)
>W141278956
JAFY01000007
Synergistota
Aminiphilus circumscriptus DSM 16581 [JAFY]
428126
428202
+
Arg
TCT
[ENA]
¡û
Identical group No.441661 (1 seq.)
>W141279000
JAFZ01000001
Synergistota
Aminobacterium mobile DSM 12262 [JAFZ]
1222865
1222941
+
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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