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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Synergistota
Anticodon = TGA
HIT:
8 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.91045 (1 seq.)
>W1712039378
NFJQ01000009
Synergistota
Cloacibacillus sp. An23 [NFJQ]
64668
64755
+
Ser
TGA
[ENA]
¡û
Identical group No.91466 (6 seq.)
>W141701225
JMKI01000048
Synergistota
Synergistes jonesii [JMKI]
9879
9966
+
Ser
TGA
[ENA]
¡û
>W1710629266
JPZQ01000057
Synergistota
Synergistes jonesii [JPZQ]
8177
8264
+
Ser
TGA
[ENA]
¡û
>W1710629310
JPZR01000048
Synergistota
Synergistes jonesii [JPZR]
8118
8205
+
Ser
TGA
[ENA]
¡û
>W1710629352
JPZS01000050
Synergistota
Synergistes jonesii [JPZS]
8153
8240
+
Ser
TGA
[ENA]
¡û
>W1710631837
JQEK01000025
Synergistota
Synergistes jonesii [JQEK]
8190
8277
+
Ser
TGA
[ENA]
¡û
>W1710631900
JQEL01000050
Synergistota
Synergistes jonesii [JQEL]
8153
8240
+
Ser
TGA
[ENA]
¡û
Identical group No.97699 (1 seq.)
>W11138601
AEIV01000001
Synergistota
Aminomonas paucivorans DSM 12260 [AEIV]
1085038
1084951
-
Ser
TGA
[ENA]
¡û
Identical group No.110793 (1 seq.)
>C121005712
CP003096
Synergistota
Thermovirga lienii DSM 17291 [CP003096]
555577
555490
-
Ser
TGA
[Ensembl]
¡û
Identical group No.110877 (1 seq.)
>W141279013
JAFZ01000001
Synergistota
Aminobacterium mobile DSM 12262 [JAFZ]
617928
617841
-
Ser
TGA
[ENA]
¡û
Identical group No.166166 (2 seq.)
>W1711137564
LVBO01000210
Synergistota
Synergistales bacterium Syner_01 [LVBO]
5492
5407
-
Ser
TGA
[ENA]
¡û
>W1610948684
LVBO01000210
Synergistota
Synergistales bacterium Syner_01 [LVBO]
5492
5407
-
Ser
TGA
[ENA]
¡û
Identical group No.166474 (3 seq.)
>W141146858
AWWC01000018
Synergistota
Jonquetella sp. BV3C21 [AWWC]
98586
98501
-
Ser
TGA
[ENA]
¡û
>W09132960
ACOO02000017
Synergistota
Jonquetella anthropi E3_33 E1 [ACOO]
98974
98889
-
Ser
TGA
[ENA]
¡û
>W121017506
AGRU01000003
Synergistota
Jonquetella anthropi DSM 22815 [AGRU]
103595
103510
-
Ser
TGA
[ENA]
¡û
Identical group No.176618 (1 seq.)
>W141278984
JAFY01000007
Synergistota
Aminiphilus circumscriptus DSM 16581 [JAFY]
95106
95021
-
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK