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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Synergistota
Anticodon = TGG
HIT:
6 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.244956 (2 seq.)
>C121008080
CP003198
Synergistota
Acetomicrobium mobile DSM 13181 [CP003198]
885549
885472
-
Pro
TGG
[Ensembl]
¡û
>W1710594054
FSQZ01000001
Synergistota
Acetomicrobium flavidum [FSQZ]
201459
201536
+
Pro
TGG
[ENA]
¡û
Identical group No.253208 (1 seq.)
>W11138608
AEIV01000002
Synergistota
Aminomonas paucivorans DSM 12260 [AEIV]
83098
83175
+
Pro
TGG
[ENA]
¡û
Identical group No.264343 (1 seq.)
>W121031629
AHGV01000001
Synergistota
Thermanaerovibrio velox DSM 12556 [AHGV]
865557
865634
+
Pro
TGG
[ENA]
¡û
Identical group No.266496 (1 seq.)
>W1710608679
FXBB01000001
Synergistota
Dethiosulfovibrio salsuginis [FXBB]
100894
100817
-
Pro
TGG
[ENA]
¡û
Identical group No.266683 (1 seq.)
>W141278980
JAFY01000007
Synergistota
Aminiphilus circumscriptus DSM 16581 [JAFY]
826696
826619
-
Pro
TGG
[ENA]
¡û
Identical group No.307535 (6 seq.)
>W141701210
JMKI01000037
Synergistota
Synergistes jonesii [JMKI]
128636
128560
-
Pro
TGG
[ENA]
¡û
>W1710629252
JPZQ01000048
Synergistota
Synergistes jonesii [JPZQ]
29405
29329
-
Pro
TGG
[ENA]
¡û
>W1710629296
JPZR01000038
Synergistota
Synergistes jonesii [JPZR]
29413
29337
-
Pro
TGG
[ENA]
¡û
>W1710629338
JPZS01000041
Synergistota
Synergistes jonesii [JPZS]
29416
29340
-
Pro
TGG
[ENA]
¡û
>W1710631857
JQEK01000051
Synergistota
Synergistes jonesii [JQEK]
530
454
-
Pro
TGG
[ENA]
¡û
>W1710631886
JQEL01000043
Synergistota
Synergistes jonesii [JQEL]
29410
29334
-
Pro
TGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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