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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Synergistota
Anticodon = TGT
HIT:
11 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.486062 (2 seq.)
>C121008069
CP003198
Synergistota
Acetomicrobium mobile DSM 13181 [CP003198]
1715530
1715455
-
Thr
TGT
[Ensembl]
¡û
>W1710594063
FSQZ01000001
Synergistota
Acetomicrobium flavidum [FSQZ]
1471405
1471480
+
Thr
TGT
[ENA]
¡û
Identical group No.487999 (1 seq.)
>W1712039367
NFJQ01000005
Synergistota
Cloacibacillus sp. An23 [NFJQ]
234235
234310
+
Thr
TGT
[ENA]
¡û
Identical group No.491401 (6 seq.)
>W141701207
JMKI01000036
Synergistota
Synergistes jonesii [JMKI]
97313
97388
+
Thr
TGT
[ENA]
¡û
>W1710629248
JPZQ01000042
Synergistota
Synergistes jonesii [JPZQ]
7420
7495
+
Thr
TGT
[ENA]
¡û
>W1710629292
JPZR01000032
Synergistota
Synergistes jonesii [JPZR]
7075
7150
+
Thr
TGT
[ENA]
¡û
>W1710629334
JPZS01000035
Synergistota
Synergistes jonesii [JPZS]
7075
7150
+
Thr
TGT
[ENA]
¡û
>W1710631835
JQEK01000024
Synergistota
Synergistes jonesii [JQEK]
7075
7150
+
Thr
TGT
[ENA]
¡û
>W1710631882
JQEL01000038
Synergistota
Synergistes jonesii [JQEL]
7075
7150
+
Thr
TGT
[ENA]
¡û
Identical group No.541233 (1 seq.)
>W11300460
ADFP01000074
Synergistota
Pyramidobacter piscolens W5455 [ADFP]
13251
13176
-
Thr
TGT
[ENA]
¡û
Identical group No.541397 (1 seq.)
>W11138624
AEIV01000002
Synergistota
Aminomonas paucivorans DSM 12260 [AEIV]
649064
648989
-
Thr
TGT
[ENA]
¡û
Identical group No.553401 (3 seq.)
>W141146834
AWWC01000006
Synergistota
Jonquetella sp. BV3C21 [AWWC]
38853
38928
+
Thr
TGT
[ENA]
¡û
>W09132988
ACOO02000037
Synergistota
Jonquetella anthropi E3_33 E1 [ACOO]
42209
42284
+
Thr
TGT
[ENA]
¡û
>W121017468
AGRU01000001
Synergistota
Jonquetella anthropi DSM 22815 [AGRU]
141626
141701
+
Thr
TGT
[ENA]
¡û
Identical group No.565070 (1 seq.)
>W131157328
AQRZ01000046
Synergistota
Synergistetes bacterium JGI 0000079-D21 [AQRZ]
18226
18301
+
Thr
TGT
[ENA]
¡û
Identical group No.603105 (2 seq.)
>W1711137600
LVBP01000282
Synergistota
Synergistales bacterium Syner_02 [LVBP]
23645
23570
-
Thr
TGT
[ENA]
¡û
>W1610948720
LVBP01000282
Synergistota
Synergistales bacterium Syner_02 [LVBP]
23645
23570
-
Thr
TGT
[ENA]
¡û
Identical group No.614286 (1 seq.)
>W121031606
AHGV01000001
Synergistota
Thermanaerovibrio velox DSM 12556 [AHGV]
285525
285600
+
Thr
TGT
[ENA]
¡û
Identical group No.629964 (1 seq.)
>W141278937
JAFY01000005
Synergistota
Aminiphilus circumscriptus DSM 16581 [JAFY]
463798
463723
-
Thr
TGT
[ENA]
¡û
Identical group No.642278 (1 seq.)
>W143011531
JFBR01000002
Synergistota
Cloacibacillus evryensis DSM 19522 [JFBR]
1959601
1959676
+
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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