This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Synergistota
Anticodon = TGT
HIT:
24 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.461175 (14 seq.)
>W1711137590
LVBP01000203
Synergistota
Synergistales bacterium Syner_02 [LVBP]
10203
10278
+
Thr
TGT
[ENA]
¡û
>WENV180095985
MTBK01100724
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
69
144
+
Thr
TGT
[ENA]
¢þ
>WENV181230640
OFEK01001989
[OFEK] activated sludge metagenome; Anaerobic digester
11635
11710
+
Thr
TGT
[ENA]
¢þ
>WENV170678353
LDZT01014033
[LDZT] terrestrial metagenome; oil reservoir sample SB1
8513
8588
+
Thr
TGT
[ENA]
¢þ
>WENV170678625
LDZU01003414
[LDZU] terrestrial metagenome; oil reservoir sample SB2
459
384
-
Thr
TGT
[ENA]
¢þ
>WENV170967247
MTKW01000575
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
20115
20190
+
Thr
TGT
[ENA]
¢þ
>WENV170972552
MTKX01034746
[MTKX] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
438
363
-
Thr
TGT
[ENA]
¢þ
>WENV170974562
MTKY01065776
[MTKY] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
711
786
+
Thr
TGT
[ENA]
¢þ
>WENV170976878
MTKZ01013685
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
6745
6820
+
Thr
TGT
[ENA]
¢þ
>W1610613705
LGGE01000026
Synergistota
Synergistales bacterium 57_84 [LGGE]
8513
8588
+
Thr
TGT
[ENA]
¡û
>W1610614163
LGGV01000039
Synergistota
Synergistales bacterium 58_81 [LGGV]
459
384
-
Thr
TGT
[ENA]
¡û
>W1610948710
LVBP01000203
Synergistota
Synergistales bacterium Syner_02 [LVBP]
10203
10278
+
Thr
TGT
[ENA]
¡û
>W1710734858
LGGE01000026
Synergistota
Synergistales bacterium 57_84 [LGGE]
8513
8588
+
Thr
TGT
[ENA]
¡û
>W1710735246
LGGV01000039
Synergistota
Synergistales bacterium 58_81 [LGGV]
459
384
-
Thr
TGT
[ENA]
¡û
Identical group No.473775 (8 seq.)
>C171050553
CP016757
Synergistota
Cloacibacillus porcorum CL-84 [CP016757]
3149272
3149347
+
Thr
TGT
-
¡û
>WENV181915274
OGYF01004574
[OGYF] human gut metagenome; faeces
3225
3150
-
Thr
TGT
[ENA]
¢þ
>WENV182031100
OHCS01002615
[OHCS] human gut metagenome; feces
5457
5382
-
Thr
TGT
[ENA]
¢þ
>WENV182180549
OHNO01002446
[OHNO] human gut metagenome; feces
4812
4737
-
Thr
TGT
[ENA]
¢þ
>WENV182212620
OHQG01002352
[OHQG] human gut metagenome; feces
4809
4884
+
Thr
TGT
[ENA]
¢þ
>WENV182215747
OHQM01001884
[OHQM] human gut metagenome; feces
7105
7030
-
Thr
TGT
[ENA]
¢þ
>WENV182883986
OKSB01095032
[OKSB] human gut metagenome; faeces
100
25
-
Thr
TGT
[ENA]
¢þ
>WENV183719985
PDWJ01024265
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
3530
3455
-
Thr
TGT
[ENA]
¢þ
Identical group No.486062 (2 seq.)
>C121008069
CP003198
Synergistota
Acetomicrobium mobile DSM 13181 [CP003198]
1715530
1715455
-
Thr
TGT
[Ensembl]
¡û
>W1710594063
FSQZ01000001
Synergistota
Acetomicrobium flavidum [FSQZ]
1471405
1471480
+
Thr
TGT
[ENA]
¡û
Identical group No.487999 (1 seq.)
>W1712039367
NFJQ01000005
Synergistota
Cloacibacillus sp. An23 [NFJQ]
234235
234310
+
Thr
TGT
[ENA]
¡û
Identical group No.490518 (3 seq.)
>W1711629559
MPPC01000012
Synergistota
Aminobacterium sp. EBM-42 [MPPC]
20647
20722
+
Thr
TGT
[ENA]
¡û
>WENV170725809
LSQX01357631
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
5270
5195
-
Thr
TGT
[ENA]
¢þ
>C10100292
CP001997
Synergistota
Aminobacterium colombiense DSM 12261 [CP001997]
325323
325398
+
Thr
TGT
[Ensembl]
¡û
Identical group No.491401 (6 seq.)
>W141701207
JMKI01000036
Synergistota
Synergistes jonesii [JMKI]
97313
97388
+
Thr
TGT
[ENA]
¡û
>W1710629248
JPZQ01000042
Synergistota
Synergistes jonesii [JPZQ]
7420
7495
+
Thr
TGT
[ENA]
¡û
>W1710629292
JPZR01000032
Synergistota
Synergistes jonesii [JPZR]
7075
7150
+
Thr
TGT
[ENA]
¡û
>W1710629334
JPZS01000035
Synergistota
Synergistes jonesii [JPZS]
7075
7150
+
Thr
TGT
[ENA]
¡û
>W1710631835
JQEK01000024
Synergistota
Synergistes jonesii [JQEK]
7075
7150
+
Thr
TGT
[ENA]
¡û
>W1710631882
JQEL01000038
Synergistota
Synergistes jonesii [JQEL]
7075
7150
+
Thr
TGT
[ENA]
¡û
Identical group No.500542 (7 seq.)
>WENV183515694
OMKS01084708
[OMKS] sediment metagenome; hot spring sediment
80
5
-
Thr
TGT
[ENA]
¢þ
>WENV170677178
LDZT01003487
[LDZT] terrestrial metagenome; oil reservoir sample SB1
660
735
+
Thr
TGT
[ENA]
¢þ
>WENV170679064
LDZU01006900
[LDZU] terrestrial metagenome; oil reservoir sample SB2
2831
2906
+
Thr
TGT
[ENA]
¢þ
>W1610613639
LGGB01000239
Synergistota
Synergistales bacterium 53_16 [LGGB]
660
735
+
Thr
TGT
[ENA]
¡û
>W1610614511
LGHG01000151
Synergistota
Synergistales bacterium 54_9 [LGHG]
2831
2906
+
Thr
TGT
[ENA]
¡û
>W1710734811
LGGB01000239
Synergistota
Synergistales bacterium 53_16 [LGGB]
660
735
+
Thr
TGT
[ENA]
¡û
>W1710735492
LGHG01000151
Synergistota
Synergistales bacterium 54_9 [LGHG]
2831
2906
+
Thr
TGT
[ENA]
¡û
Identical group No.503198 (4 seq.)
>WENV170563680
CZCB01024971
[CZCB] anaerobic digester metagenome; anaerobic digester
566
641
+
Thr
TGT
[ENA]
¢þ
>WENV170676963
LDZS01003693
[LDZS] terrestrial metagenome; oil reservoir sample K3
2289
2364
+
Thr
TGT
[ENA]
¢þ
>W09126642
ACJX01000221
Synergistota
Acetomicrobium hydrogeniformans ATCC BAA-1850 [ACJX]
98442
98367
-
Thr
TGT
[ENA]
¡û
>W1710530834
FNPD01000004
Synergistota
Acetomicrobium thermoterrenum DSM 13490 [FNPD]
157140
157065
-
Thr
TGT
[ENA]
¡û
Identical group No.504035 (3 seq.)
>WENV170676913
LDZS01003188
[LDZS] terrestrial metagenome; oil reservoir sample K3
6281
6206
-
Thr
TGT
[ENA]
¢þ
>W1610613281
LGFQ01000008
Synergistota
Synergistales bacterium 54_24 [LGFQ]
6281
6206
-
Thr
TGT
[ENA]
¡û
>W1710734488
LGFQ01000008
Synergistota
Synergistales bacterium 54_24 [LGFQ]
6281
6206
-
Thr
TGT
[ENA]
¡û
Identical group No.504044 (11 seq.)
>WENV180809557
ODJK01024519
[ODJK] human metagenome; G_DNA_Subgingival plaque
782
857
+
Thr
TGT
[ENA]
¢þ
>WENV180981555
ODVE01030980
[ODVE] human metagenome; G_DNA_Supragingival plaque
527
602
+
Thr
TGT
[ENA]
¢þ
>WENV181050044
ODYD01005193
[ODYD] human metagenome; G_DNA_Supragingival plaque
2120
2195
+
Thr
TGT
[ENA]
¢þ
>WENV181076503
OEAP01006295
[OEAP] human metagenome; G_DNA_Supragingival plaque
1820
1895
+
Thr
TGT
[ENA]
¢þ
>WENV181081334
OEAS01179642
[OEAS] human metagenome; G_DNA_Supragingival plaque
56
131
+
Thr
TGT
[ENA]
¢þ
>WENV181091610
OEBC01058872
[OEBC] human metagenome; G_DNA_Supragingival plaque
495
570
+
Thr
TGT
[ENA]
¢þ
>WENV181179993
OEJT01043088
[OEJT] human metagenome; G_DNA_Supragingival plaque
172
97
-
Thr
TGT
[ENA]
¢þ
>WENV170676971
LDZS01003839
[LDZS] terrestrial metagenome; oil reservoir sample K3
1702
1627
-
Thr
TGT
[ENA]
¢þ
>C121005666
CP003096
Synergistota
Thermovirga lienii DSM 17291 [CP003096]
467316
467391
+
Thr
TGT
[Ensembl]
¡û
>W1610613333
LGFS01000001
Synergistota
Thermovirga lienii [LGFS]
1702
1627
-
Thr
TGT
[ENA]
¡û
>W1710734540
LGFS01000001
Synergistota
Thermovirga lienii [LGFS]
1702
1627
-
Thr
TGT
[ENA]
¡û
Identical group No.517588 (4 seq.)
>WENV181908727
OGYB01000431
[OGYB] human gut metagenome; faeces
15647
15722
+
Thr
TGT
[ENA]
¢þ
>WENV182537990
OIXH01028962
[OIXH] human gut metagenome; faeces
304
229
-
Thr
TGT
[ENA]
¢þ
>WENV183039080
OLGB01002928
[OLGB] human gut metagenome; faeces
129
204
+
Thr
TGT
[ENA]
¢þ
>W121000458
ACUH01000005
Synergistota
Synergistes sp. 3_1_syn1 [ACUH]
24071
23996
-
Thr
TGT
[ENA]
¡û
Identical group No.528008 (4 seq.)
>W1711137571
LVBO01000410
Synergistota
Synergistales bacterium Syner_01 [LVBO]
4255
4330
+
Thr
TGT
[ENA]
¡û
>WENV180097353
MTBK01183732
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
24458
24533
+
Thr
TGT
[ENA]
¢þ
>WENV170973756
MTKY01050865
[MTKY] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
3102
3027
-
Thr
TGT
[ENA]
¢þ
>W1610948691
LVBO01000410
Synergistota
Synergistales bacterium Syner_01 [LVBO]
4255
4330
+
Thr
TGT
[ENA]
¡û
Identical group No.538363 (3 seq.)
>W1630018559
LUYJ01000168
Euryarchaeota
Methanomicrobiales archaeon Methan_06 [LUYJ]
1516
1441
-
Thr
TGT
[ENA]
¡û
>W1630018730
LVBQ01000159
Synergistota
Synergistales bacterium Syner_03 [LVBQ]
1516
1441
-
Thr
TGT
[ENA]
¡û
>W1730021961
LVBQ01000159
Synergistota
Synergistales bacterium Syner_03 [LVBQ]
1516
1441
-
Thr
TGT
[ENA]
¡û
Identical group No.541233 (1 seq.)
>W11300460
ADFP01000074
Synergistota
Pyramidobacter piscolens W5455 [ADFP]
13251
13176
-
Thr
TGT
[ENA]
¡û
Identical group No.541397 (1 seq.)
>W11138624
AEIV01000002
Synergistota
Aminomonas paucivorans DSM 12260 [AEIV]
649064
648989
-
Thr
TGT
[ENA]
¡û
Identical group No.553401 (3 seq.)
>W141146834
AWWC01000006
Synergistota
Jonquetella sp. BV3C21 [AWWC]
38853
38928
+
Thr
TGT
[ENA]
¡û
>W09132988
ACOO02000037
Synergistota
Jonquetella anthropi E3_33 E1 [ACOO]
42209
42284
+
Thr
TGT
[ENA]
¡û
>W121017468
AGRU01000001
Synergistota
Jonquetella anthropi DSM 22815 [AGRU]
141626
141701
+
Thr
TGT
[ENA]
¡û
Identical group No.565070 (1 seq.)
>W131157328
AQRZ01000046
Synergistota
Synergistetes bacterium JGI 0000079-D21 [AQRZ]
18226
18301
+
Thr
TGT
[ENA]
¡û
Identical group No.594862 (4 seq.)
>W141279022
JAFZ01000004
Synergistota
Aminobacterium mobile DSM 12262 [JAFZ]
103640
103565
-
Thr
TGT
[ENA]
¡û
>WENV170717092
LSQX01024170
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
1632
1707
+
Thr
TGT
[ENA]
¢þ
>WENV170717282
LSQX01030192
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
8240
8165
-
Thr
TGT
[ENA]
¢þ
>WENV170725830
LSQX01358336
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
279
354
+
Thr
TGT
[ENA]
¢þ
Identical group No.601708 (6 seq.)
>WENV183717284
PDWJ01000687
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
97
22
-
Thr
TGT
[ENA]
¢þ
>WENV183721457
PDWJ01070585
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
97
22
-
Thr
TGT
[ENA]
¢þ
>WENV170656246
JTFO01006440
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
762
687
-
Thr
TGT
[ENA]
¢þ
>WENV170657060
JTFO01074398
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
390
315
-
Thr
TGT
[ENA]
¢þ
>W09108935
ABTR01000025
Synergistota
Dethiosulfovibrio peptidovorans DSM 11002 [ABTR]
16093
16168
+
Thr
TGT
[ENA]
¡û
>W1710608716
FXBB01000049
Synergistota
Dethiosulfovibrio salsuginis [FXBB]
13838
13913
+
Thr
TGT
[ENA]
¡û
Identical group No.603105 (2 seq.)
>W1711137600
LVBP01000282
Synergistota
Synergistales bacterium Syner_02 [LVBP]
23645
23570
-
Thr
TGT
[ENA]
¡û
>W1610948720
LVBP01000282
Synergistota
Synergistales bacterium Syner_02 [LVBP]
23645
23570
-
Thr
TGT
[ENA]
¡û
Identical group No.614286 (1 seq.)
>W121031606
AHGV01000001
Synergistota
Thermanaerovibrio velox DSM 12556 [AHGV]
285525
285600
+
Thr
TGT
[ENA]
¡û
Identical group No.621924 (3 seq.)
>WENV181409945
OGCI01000973
[OGCI] hot springs metagenome; Hot spring water
26939
27014
+
Thr
TGT
[ENA]
¢þ
>W09110156
ABUW01000009
Synergistota
Thermanaerovibrio acidaminovorans DSM 6589 [ABUW]
2175
2100
-
Thr
TGT
[ENA]
¡û
>C10112993
CP001818
Synergistota
Thermanaerovibrio acidaminovorans DSM 6589 [CP001818]
1585626
1585551
-
Thr
TGT
[Ensembl]
¡û
Identical group No.629964 (1 seq.)
>W141278937
JAFY01000005
Synergistota
Aminiphilus circumscriptus DSM 16581 [JAFY]
463798
463723
-
Thr
TGT
[ENA]
¡û
Identical group No.642278 (1 seq.)
>W143011531
JFBR01000002
Synergistota
Cloacibacillus evryensis DSM 19522 [JFBR]
1959601
1959676
+
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK