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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Synergistota
Anticodon = TTC
HIT:
4 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.491403 (6 seq.)
>W141701215
JMKI01000047
Synergistota
Synergistes jonesii [JMKI]
9545
9620
+
Glu
TTC
[ENA]
¡û
>W1710629256
JPZQ01000056
Synergistota
Synergistes jonesii [JPZQ]
8715
8790
+
Glu
TTC
[ENA]
¡û
>W1710629300
JPZR01000046
Synergistota
Synergistes jonesii [JPZR]
8717
8792
+
Glu
TTC
[ENA]
¡û
>W1710629342
JPZS01000048
Synergistota
Synergistes jonesii [JPZS]
8715
8790
+
Glu
TTC
[ENA]
¡û
>W1710631825
JQEK01000023
Synergistota
Synergistes jonesii [JQEK]
8715
8790
+
Glu
TTC
[ENA]
¡û
>W1710631890
JQEL01000049
Synergistota
Synergistes jonesii [JQEL]
8715
8790
+
Glu
TTC
[ENA]
¡û
Identical group No.538078 (1 seq.)
>C161104056
FP929056
Synergistota
Fretibacterium fastidiosum SGP1 [FP929056]
260308
260233
-
Glu
TTC
-
¡û
Identical group No.553417 (3 seq.)
>W141146872
AWWC01000024
Synergistota
Jonquetella sp. BV3C21 [AWWC]
22070
22145
+
Glu
TTC
[ENA]
¡û
>W09132979
ACOO02000027
Synergistota
Jonquetella anthropi E3_33 E1 [ACOO]
68344
68269
-
Glu
TTC
[ENA]
¡û
>W121017501
AGRU01000003
Synergistota
Jonquetella anthropi DSM 22815 [AGRU]
480930
480855
-
Glu
TTC
[ENA]
¡û
Identical group No.641544 (1 seq.)
>C121005677
CP003096
Synergistota
Thermovirga lienii DSM 17291 [CP003096]
579860
579935
+
Glu
TTC
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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