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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Synergistota
Anticodon = TTG
HIT:
7 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.487996 (1 seq.)
>W1712039352
NFJQ01000002
Synergistota
Cloacibacillus sp. An23 [NFJQ]
107329
107404
+
Gln
TTG
[ENA]
¡û
Identical group No.491407 (6 seq.)
>W141701227
JMKI01000053
Synergistota
Synergistes jonesii [JMKI]
24248
24173
-
Gln
TTG
[ENA]
¡û
>W1710629267
JPZQ01000061
Synergistota
Synergistes jonesii [JPZQ]
23369
23294
-
Gln
TTG
[ENA]
¡û
>W1710629311
JPZR01000053
Synergistota
Synergistes jonesii [JPZR]
23372
23297
-
Gln
TTG
[ENA]
¡û
>W1710629353
JPZS01000053
Synergistota
Synergistes jonesii [JPZS]
23369
23294
-
Gln
TTG
[ENA]
¡û
>W1710631817
JQEK01000004
Synergistota
Synergistes jonesii [JQEK]
23372
23297
-
Gln
TTG
[ENA]
¡û
>W1710631901
JQEL01000053
Synergistota
Synergistes jonesii [JQEL]
23369
23294
-
Gln
TTG
[ENA]
¡û
Identical group No.574432 (2 seq.)
>W09126617
ACJX01000148
Synergistota
Acetomicrobium hydrogeniformans ATCC BAA-1850 [ACJX]
13618
13543
-
Gln
TTG
[ENA]
¡û
>W1710530811
FNPD01000001
Synergistota
Acetomicrobium thermoterrenum DSM 13490 [FNPD]
241701
241776
+
Gln
TTG
[ENA]
¡û
Identical group No.752696 (1 seq.)
>W121031623
AHGV01000001
Synergistota
Thermanaerovibrio velox DSM 12556 [AHGV]
757856
757930
+
Gln
TTG
[ENA]
¡û
Identical group No.772076 (1 seq.)
>C121005681
CP003096
Synergistota
Thermovirga lienii DSM 17291 [CP003096]
802828
802902
+
Gln
TTG
[Ensembl]
¡û
Identical group No.803348 (1 seq.)
>W11138597
AEIV01000001
Synergistota
Aminomonas paucivorans DSM 12260 [AEIV]
1367355
1367428
+
Gln
TTG
[ENA]
¡û
Identical group No.826629 (2 seq.)
>W09108898
ABTR01000001
Synergistota
Dethiosulfovibrio peptidovorans DSM 11002 [ABTR]
373524
373451
-
Gln
TTG
[ENA]
¡û
>W09108899
ABTR01000001
Synergistota
Dethiosulfovibrio peptidovorans DSM 11002 [ABTR]
361441
361368
-
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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