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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Synergistota
Anticodon = TTT
HIT:
10 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.486065 (4 seq.)
>W09126622
ACJX01000170
Synergistota
Acetomicrobium hydrogeniformans ATCC BAA-1850 [ACJX]
93639
93564
-
Lys
TTT
[ENA]
¡û
>C121008052
CP003198
Synergistota
Acetomicrobium mobile DSM 13181 [CP003198]
288249
288324
+
Lys
TTT
[Ensembl]
¡û
>W1710530842
FNPD01000010
Synergistota
Acetomicrobium thermoterrenum DSM 13490 [FNPD]
382
457
+
Lys
TTT
[ENA]
¡û
>W1710594081
FSQZ01000001
Synergistota
Acetomicrobium flavidum [FSQZ]
787686
787611
-
Lys
TTT
[ENA]
¡û
Identical group No.488001 (1 seq.)
>W1712039386
NFJQ01000011
Synergistota
Cloacibacillus sp. An23 [NFJQ]
58651
58726
+
Lys
TTT
[ENA]
¡û
Identical group No.539337 (1 seq.)
>W1711629574
MPPC01000025
Synergistota
Aminobacterium sp. EBM-42 [MPPC]
124475
124400
-
Lys
TTT
[ENA]
¡û
Identical group No.541236 (1 seq.)
>W11300942
AEIV01000001
Synergistota
Aminomonas paucivorans DSM 12260 [AEIV]
971388
971463
+
Lys
TTT
[ENA]
¡û
Identical group No.553410 (3 seq.)
>W141146871
AWWC01000024
Synergistota
Jonquetella sp. BV3C21 [AWWC]
21992
22067
+
Lys
TTT
[ENA]
¡û
>W09132978
ACOO02000027
Synergistota
Jonquetella anthropi E3_33 E1 [ACOO]
68422
68347
-
Lys
TTT
[ENA]
¡û
>W121017500
AGRU01000003
Synergistota
Jonquetella anthropi DSM 22815 [AGRU]
481008
480933
-
Lys
TTT
[ENA]
¡û
Identical group No.574071 (2 seq.)
>W1630018728
LVBQ01000074
Synergistota
Synergistales bacterium Syner_03 [LVBQ]
331
256
-
Lys
TTT
[ENA]
¡û
>W1730021959
LVBQ01000074
Synergistota
Synergistales bacterium Syner_03 [LVBQ]
331
256
-
Lys
TTT
[ENA]
¡û
Identical group No.621932 (1 seq.)
>W09108900
ABTR01000001
Synergistota
Dethiosulfovibrio peptidovorans DSM 11002 [ABTR]
248391
248316
-
Lys
TTT
[ENA]
¡û
Identical group No.629966 (1 seq.)
>W141278952
JAFY01000007
Synergistota
Aminiphilus circumscriptus DSM 16581 [JAFY]
156956
157031
+
Lys
TTT
[ENA]
¡û
Identical group No.641546 (1 seq.)
>C121005676
CP003096
Synergistota
Thermovirga lienii DSM 17291 [CP003096]
579765
579840
+
Lys
TTT
[Ensembl]
¡û
Identical group No.642157 (1 seq.)
>W141278987
JAFZ01000001
Synergistota
Aminobacterium mobile DSM 12262 [JAFZ]
673181
673256
+
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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