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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Tenericutes
Anticodon = AAG
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.181974 (7 seq.)
>PL191001760
LR214965
Tenericutes
Mycoplasma fermentans NCTC10117 plasmid:11 (LR214965)
90334
90250
-
Leu
AAG
[ENA]
¡û
>PL191001811
LR214999
Tenericutes
Mycoplasma conjunctivae NCTC10147 plasmid:3 (LR214999)
100742
100658
-
Leu
AAG
[ENA]
¡û
>W1910002643
ATFG01000030
Mycoplasmatota
Mycoplasmopsis fermentans MF-I1 [ATFG]
78641
78557
-
Leu
AAG
[ENA]
¡û
>W1910002678
ATFH01000026
Mycoplasmatota
Mycoplasmopsis fermentans MF-I2 [ATFH]
18812
18728
-
Leu
AAG
[ENA]
¡û
>C09107672
AP009608
Mycoplasmatota
Mycoplasmopsis fermentans PG18 [AP009608]
539164
539080
-
Leu
AAG
[Ensembl]
¡û
>C11114258
CP001995
Mycoplasmatota
Mycoplasmopsis fermentans JER [CP001995]
532699
532615
-
Leu
AAG
[Ensembl]
¡û
>C11114293
CP002458
Mycoplasmatota
Mycoplasmopsis fermentans M64 [CP002458]
615823
615739
-
Leu
AAG
[Ensembl]
¡û
Identical group No.185513 (13 seq.)
>PL191001771
LR214986
Tenericutes
Mycoplasma cynos NCTC10142 plasmid:13 (LR214986)
575069
575153
+
Leu
AAG
[ENA]
¡û
>C191218103
LR214950
Mycoplasmatota
Mycoplasmopsis gallinacea NCTC10183 [LR214950]
253254
253170
-
Leu
AAG
-
¡û
>C191218457
LR215024
Mycoplasmatota
Mycoplasmopsis glycophila NCTC10194 [LR215024]
461609
461525
-
Leu
AAG
-
¡û
>C191218495
LR215031
Mycoplasmatota
Mycoplasmopsis gallopavonis NCTC10186 [LR215031]
316238
316322
+
Leu
AAG
-
¡û
>C191218577
LR215036
Mycoplasmatota
Mycoplasmopsis citelli NCTC10181 [LR215036]
66093
66009
-
Leu
AAG
-
¡û
>C191218611
LR215039
Mycoplasmatota
Mycoplasmopsis columboralis NCTC10179 [LR215039]
222795
222879
+
Leu
AAG
-
¡û
>W141561108
JHYE01000004
Mycoplasmatota
Mycoplasmopsis glycophila ATCC 35277 [JHYE]
16430
16346
-
Leu
AAG
[ENA]
¡û
>W141731297
JNIZ01000002
Mycoplasmatota
Mycoplasmopsis sturni DSM 22021 [JNIZ]
243000
243084
+
Leu
AAG
[ENA]
¡û
>W141732358
JNJZ01000007
Mycoplasmatota
Mycoplasmopsis columboralis ATCC 29258 [JNJZ]
1129
1213
+
Leu
AAG
[ENA]
¡û
>W141807425
JPOK01000004
Mycoplasmatota
Mycoplasma buteonis [JPOK]
3236
3320
+
Leu
AAG
[ENA]
¡û
>W1911768471
QXGN01000041
Mycoplasmatota
Mycoplasmopsis gallopavonis WR1 [QXGN]
1528
1444
-
Leu
AAG
[ENA]
¡û
>C151075549
CP011021
Mycoplasmatota
Mycoplasmopsis gallinacea B2096 8B [CP011021]
694501
694585
+
Leu
AAG
[Ensembl]
¡û
>C151099837
HF559394
Mycoplasmatota
Mycoplasmopsis cynos C142 [HF559394]
550808
550892
+
Leu
AAG
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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