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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Tenericutes
Anticodon = CTT
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.463008 (7 seq.)
>PL191001814
LR215003
Tenericutes
Mycoplasma conjunctivae NCTC10147 plasmid:7 (LR215003)
125295
125370
+
Lys
CTT
[ENA]
¡û
>C191218151
LR214955
Mycoplasmatota
Mycoplasmopsis fermentans NCTC10117 [LR214955, LR214962]
120733
120658
-
Lys
CTT
-
¡û
>W1910002652
ATFG01000047
Mycoplasmatota
Mycoplasmopsis fermentans MF-I1 [ATFG]
2304
2229
-
Lys
CTT
[ENA]
¡û
>W1910002686
ATFH01000044
Mycoplasmatota
Mycoplasmopsis fermentans MF-I2 [ATFH]
2305
2230
-
Lys
CTT
[ENA]
¡û
>C09107665
AP009608
Mycoplasmatota
Mycoplasmopsis fermentans PG18 [AP009608]
784809
784884
+
Lys
CTT
[Ensembl]
¡û
>C11114242
CP001995
Mycoplasmatota
Mycoplasmopsis fermentans JER [CP001995]
955554
955479
-
Lys
CTT
[Ensembl]
¡û
>C11114277
CP002458
Mycoplasmatota
Mycoplasmopsis fermentans M64 [CP002458]
1096970
1096895
-
Lys
CTT
[Ensembl]
¡û
Identical group No.516374 (5 seq.)
>WENV180787927
ODIS01021805
[ODIS] human metagenome; G_DNA_Supragingival plaque
1419
1494
+
Lys
CTT
[ENA]
¢þ
>WENV180881154
ODLZ01189323
[ODLZ] human metagenome; G_DNA_Tongue dorsum
31
106
+
Lys
CTT
[ENA]
¢þ
>WENV181178576
OEJT01000066
[OEJT] human metagenome; G_DNA_Supragingival plaque
38032
37957
-
Lys
CTT
[ENA]
¢þ
>W141170983
AXZE01000012
Mycoplasmatota
Metamycoplasma salivarium ATCC 23064 [AXZE]
37963
37888
-
Lys
CTT
[ENA]
¡û
>PL191001696
LR214939
Tenericutes
Mycoplasma salivarium NCTC10113 plasmid:2 (LR214939)
374447
374372
-
Lys
CTT
[ENA]
¡û
Identical group No.525300 (2 seq.)
>PL191001775
LR214986
Tenericutes
Mycoplasma cynos NCTC10142 plasmid:13 (LR214986)
807425
807500
+
Lys
CTT
[ENA]
¡û
>C151099841
HF559394
Mycoplasmatota
Mycoplasmopsis cynos C142 [HF559394]
813568
813643
+
Lys
CTT
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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