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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Tenericutes
Anticodon = GTT
HIT:
5 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.656344 (55 seq.)
>W1711799341
MWWN01000002
Mycoplasmatota
Mesomycoplasma hyopneumoniae [MWWN]
17275
17201
-
Asn
GTT
[ENA]
¡û
>W1711942848
NBBN01000052
Mycoplasmatota
Mesomycoplasma hyopneumoniae [NBBN]
418
344
-
Asn
GTT
[ENA]
¡û
>C171051516
CP016817
Mycoplasmatota
Mesomycoplasma hyorhinis MDBK-IPV [CP016817]
659268
659194
-
Asn
GTT
-
¡û
>W131098194
AORH01000034
Mycoplasmatota
Mycoplasmopsis bovigenitalium 51080 [AORH]
102223
102297
+
Asn
GTT
[ENA]
¡û
>W131185097
ARTL01000024
Mycoplasmatota
Mesomycoplasma hyorhinis ATCC 17981 [ARTL]
25552
25626
+
Asn
GTT
[ENA]
¡û
>W131214868
ATUN01000004
Mycoplasmatota
Mesomycoplasma moatsii ATCC 27625 [ATUN]
86685
86759
+
Asn
GTT
[ENA]
¡û
>C013573
AE017332
Mycoplasmatota
Mesomycoplasma hyopneumoniae 232 [AE017332]
119922
119848
-
Asn
GTT
[Ensembl]
¡û
>C013579
AE017244
Mycoplasmatota
Mesomycoplasma hyopneumoniae 7448 [AE017244]
335463
335537
+
Asn
GTT
[Ensembl]
¡û
>C013609
AE017243
Mycoplasmatota
Mesomycoplasma hyopneumoniae J [AE017243]
321929
322003
+
Asn
GTT
[Ensembl]
¡û
>W141283058
JAKV01000002
Mycoplasmatota
Mesomycoplasma ovipneumoniae NM2010 [JAKV]
161309
161383
+
Asn
GTT
[ENA]
¡û
>W141450890
JFAD01000010
Mycoplasmatota
Mesomycoplasma ovipneumoniae 14811 [JFAD]
11464
11538
+
Asn
GTT
[ENA]
¡û
>PL191001723
LR214949
Tenericutes
Mycoplasma hyorhinis NCTC10121 plasmid:3 (LR214949)
665489
665415
-
Asn
GTT
[ENA]
¡û
>PL191001806
LR214993
Tenericutes
Mycoplasma hyopneumoniae NCTC10127 plasmid:2 (LR214993)
27129
27055
-
Asn
GTT
[ENA]
¡û
>C181003541
AP017902
Mycoplasmatota
Mycoplasmopsis bovigenitalium HAZ596 [AP017902]
735823
735897
+
Asn
GTT
-
¡û
>C181071523
CP022714
Mycoplasmatota
Mesomycoplasma hyopneumoniae KM014 [CP022714]
560096
560170
+
Asn
GTT
-
¡û
>C181096456
CP024161
Mycoplasmatota
Mesomycoplasma dispar GS01 [CP024161]
350452
350378
-
Asn
GTT
-
¡û
>C191006232
AP018940
Mycoplasmatota
Mycoplasmopsis californica HAZ106_1 [AP018940]
162006
161932
-
Asn
GTT
-
¡û
>C191006263
AP018941
Mycoplasmatota
Mycoplasmopsis californica HAZ106_1erythromycin [AP018941]
162005
161931
-
Asn
GTT
-
¡û
>C191006294
AP018942
Mycoplasmatota
Mycoplasmopsis californica HAZ106_1lincomycin [AP018942]
162005
161931
-
Asn
GTT
-
¡û
>C191006325
AP018943
Mycoplasmatota
Mycoplasmopsis californica HAZ160_1erythromycin [AP018943]
155926
155852
-
Asn
GTT
-
¡û
>C191006356
AP018944
Mycoplasmatota
Mycoplasmopsis californica HAZ160_1lincomycin [AP018944]
155926
155852
-
Asn
GTT
-
¡û
>C191132365
CP034841
Mycoplasmatota
Mycoplasmopsis phocirhinis 852 [CP034841]
765262
765336
+
Asn
GTT
-
¡û
>C191161513
CP038641
Mycoplasmatota
Mesomycoplasma hyopneumoniae ES-2 [CP038641]
334374
334448
+
Asn
GTT
-
¡û
>C191218200
LR214970
Mycoplasmatota
Mycoplasmopsis bovigenitalium NCTC10122 [LR214970]
613239
613165
-
Asn
GTT
-
¡û
>C191218235
LR214971
Mycoplasmatota
Mesomycoplasma dispar NCTC10125 [LR214971]
355508
355434
-
Asn
GTT
-
¡û
>C191218306
LR214997
Mycoplasmatota
Mesomycoplasma conjunctivae NCTC10147 [LR214997]
645697
645623
-
Asn
GTT
-
¡û
>C191218471
LR215028
Mycoplasmatota
Mesomycoplasma ovipneumoniae NCTC10151 [LR215025, LR215028]
875159
875233
+
Asn
GTT
-
¡û
>C191224789
LS991950
Mycoplasmatota
Mesomycoplasma hyorhinis NCTC10130 [LS991950]
660549
660475
-
Asn
GTT
-
¡û
>W141558826
JHWG01000001
Mycoplasmatota
Mesomycoplasma molare ATCC 27746 [JHWG]
87941
87867
-
Asn
GTT
[ENA]
¡û
>W141731602
JNJG01000008
Mycoplasmatota
Mycoplasma simbae ATCC 49888 [JNJG]
14757
14831
+
Asn
GTT
[ENA]
¡û
>W141779701
JOOB01000007
Mycoplasmatota
Mycoplasmopsis opalescens ATCC 27921 [JOOB]
62835
62909
+
Asn
GTT
[ENA]
¡û
>W1910000256
AGRE01000080
Mycoplasmatota
Mesomycoplasma ovipneumoniae ATCC 29419 [AGRE]
12407
12333
-
Asn
GTT
[ENA]
¡û
>W1910000287
AJQV01000080
Mycoplasmatota
Mycoplasma mycoides subsp. capri str. G1201 [AJQV]
12407
12333
-
Asn
GTT
[ENA]
¡û
>C09107484
FM864216
Mycoplasmatota
Mesomycoplasma conjunctivae HRC/581T [FM864216]
592592
592518
-
Asn
GTT
[Ensembl]
¡û
>C141009328
CP006849
Mycoplasmatota
Mesomycoplasma hyorhinis DBS 1050 [CP006849]
659355
659281
-
Asn
GTT
[Ensembl]
¡û
>W1910573318
JOTL01000018
Mycoplasmatota
Mesomycoplasma ovipneumoniae ATCC 29419 Y98 [JOTL]
11447
11521
+
Asn
GTT
[ENA]
¡û
>C151001444
AP013353
Mycoplasmatota
Mycoplasmopsis californica HAZ160_1 [AP013353]
155926
155852
-
Asn
GTT
[Ensembl]
¡û
>C151017580
CP007154
Mycoplasmatota
Mesomycoplasma bovoculi M165/69 [CP007154]
75857
75931
+
Asn
GTT
[Ensembl]
¡û
>C151019165
CP007229
Mycoplasmatota
Mesomycoplasma dispar ATCC 27140 [CP007229]
355505
355431
-
Asn
GTT
[Ensembl]
¡û
>C151026441
CP007521
Mycoplasmatota
Mycoplasmopsis californica ST-6 [CP007521]
647565
647639
+
Asn
GTT
[Ensembl]
¡û
>C10109445
CP002170
Mycoplasmatota
Mesomycoplasma hyorhinis HUB-1 [CP002170]
661365
661291
-
Asn
GTT
[Ensembl]
¡û
>W1510643872
CVNB01000014
Chlamydiota
Chlamydia trachomatis LGV98 [CVNB]
18406
18480
+
Asn
GTT
[ENA]
¡û
>C11114470
CP002274
Mycoplasmatota
Mesomycoplasma hyopneumoniae 168 [CP002274]
350586
350660
+
Asn
GTT
[Ensembl]
¡û
>C11114499
CP002669
Mycoplasmatota
Mesomycoplasma hyorhinis MCLD [CP002669]
653403
653477
+
Asn
GTT
[Ensembl]
¡û
>W11163114
AFHO01000002
Mycoplasmatota
Mesomycoplasma ovipneumoniae SC01 [AFHO]
49689
49763
+
Asn
GTT
[ENA]
¡û
>C121009155
CP003231
Mycoplasmatota
Mesomycoplasma hyorhinis GDL-1 [CP003231]
659372
659298
-
Asn
GTT
[Ensembl]
¡û
>C131002143
CP003131
Mycoplasmatota
Mesomycoplasma hyopneumoniae 168-L [CP003131]
350691
350765
+
Asn
GTT
[Ensembl]
¡û
>C131007154
CP003802
Mycoplasmatota
Mesomycoplasma hyopneumoniae 7422 [CP003802]
348323
348397
+
Asn
GTT
[Ensembl]
¡û
>C131009712
CP003914
Mycoplasmatota
Mesomycoplasma hyorhinis SK76 [CP003914]
660267
660193
-
Asn
GTT
[Ensembl]
¡û
>W1710624984
JOTE01000016
Mycoplasmatota
Mesomycoplasma ovipneumoniae [JOTE]
24159
24233
+
Asn
GTT
[ENA]
¡û
>W1710625005
JOTF01000006
Mycoplasmatota
Mesomycoplasma ovipneumoniae [JOTF]
23008
23082
+
Asn
GTT
[ENA]
¡û
>W1710625035
JOTG01000003
Mycoplasmatota
Mesomycoplasma ovipneumoniae [JOTG]
35053
35127
+
Asn
GTT
[ENA]
¡û
>W1710625093
JOTI01000002
Mycoplasmatota
Mesomycoplasma ovipneumoniae [JOTI]
11358
11432
+
Asn
GTT
[ENA]
¡û
>W1710625139
JOTJ01000034
Mycoplasmatota
Mesomycoplasma ovipneumoniae [JOTJ]
11356
11430
+
Asn
GTT
[ENA]
¡û
>W1710625155
JOTK01000032
Mycoplasmatota
Mesomycoplasma ovipneumoniae [JOTK]
9863
9789
-
Asn
GTT
[ENA]
¡û
Identical group No.659519 (13 seq.)
>C012862
CU179680
Mycoplasmatota
Mycoplasmopsis agalactiae PG2 [CU179680]
258997
259071
+
Asn
GTT
[Ensembl]
¡û
>PL191001838
LR215004
Tenericutes
Mycoplasma conjunctivae NCTC10147 plasmid:8 (LR215004)
112651
112725
+
Asn
GTT
[ENA]
¡û
>C181218532
LT578418
Mycoplasmatota
Mycoplasmopsis agalactiae [LT578418]
450993
450919
-
Asn
GTT
-
¡û
>C191218142
LR214955
Mycoplasmatota
Mycoplasmopsis fermentans NCTC10117 [LR214955, LR214962]
485877
485951
+
Asn
GTT
-
¡û
>C191218589
LR215037
Mycoplasmatota
Mycoplasmopsis maculosa NCTC10168 [LR215037]
854347
854421
+
Asn
GTT
-
¡û
>W141701752
JMKY01000001
Mycoplasmatota
Mycoplasmopsis lipofaciens ATCC 35015 [JMKY]
47355
47429
+
Asn
GTT
[ENA]
¡û
>W1910002627
ATFG01000014
Mycoplasmatota
Mycoplasmopsis fermentans MF-I1 [ATFG]
46534
46608
+
Asn
GTT
[ENA]
¡û
>W1910002662
ATFH01000012
Mycoplasmatota
Mycoplasmopsis fermentans MF-I2 [ATFH]
40100
40174
+
Asn
GTT
[ENA]
¡û
>C09107654
AP009608
Mycoplasmatota
Mycoplasmopsis fermentans PG18 [AP009608]
399010
399084
+
Asn
GTT
[Ensembl]
¡û
>C11114234
CP001995
Mycoplasmatota
Mycoplasmopsis fermentans JER [CP001995]
309006
309080
+
Asn
GTT
[Ensembl]
¡û
>C11114269
CP002458
Mycoplasmatota
Mycoplasmopsis fermentans M64 [CP002458]
343156
343230
+
Asn
GTT
[Ensembl]
¡û
>C121016395
FP671138
Mycoplasmatota
Mycoplasmopsis agalactiae 5632 [FP671138]
265944
266018
+
Asn
GTT
[Ensembl]
¡û
>W121065174
AJPR01000011
Mycoplasmatota
Mycoplasmopsis agalactiae 14628 [AJPR]
299896
299970
+
Asn
GTT
[ENA]
¡û
Identical group No.660159 (30 seq.)
>W131182320
ARQG01000016
Mycoplasmatota
Metamycoplasma hominis ATCC 27545 [ARQG]
29272
29198
-
Asn
GTT
[ENA]
¡û
>W1711665604
MRAX01000016
Mycoplasmatota
Metamycoplasma hominis [MRAX]
4118
4192
+
Asn
GTT
[ENA]
¡û
>W1711665635
MRAY01000014
Mycoplasmatota
Metamycoplasma hominis [MRAY]
4019
4093
+
Asn
GTT
[ENA]
¡û
>WENV180751625
ODHS01089819
[ODHS] human metagenome; G_DNA_Supragingival plaque
96
170
+
Asn
GTT
[ENA]
¢þ
>WENV181062850
ODYO01056449
[ODYO] human metagenome; G_DNA_Palatine Tonsils
174
100
-
Asn
GTT
[ENA]
¢þ
>WENV181077504
OEAP01064431
[OEAP] human metagenome; G_DNA_Supragingival plaque
311
385
+
Asn
GTT
[ENA]
¢þ
>WENV181178986
OEJT01000876
[OEJT] human metagenome; G_DNA_Supragingival plaque
17083
17009
-
Asn
GTT
[ENA]
¢þ
>W141170974
AXZE01000010
Mycoplasmatota
Metamycoplasma salivarium ATCC 23064 [AXZE]
129128
129202
+
Asn
GTT
[ENA]
¡û
>PL191001698
LR214939
Tenericutes
Mycoplasma salivarium NCTC10113 plasmid:2 (LR214939)
189072
188998
-
Asn
GTT
[ENA]
¡û
>C181131000
CP026341
Mycoplasmatota
Metamycoplasma hominis [CP026341]
295039
295113
+
Asn
GTT
-
¡û
>C191095642
CP032849
Mycoplasmatota
Metamycoplasma hominis PX1114 [CP032849]
293914
293988
+
Asn
GTT
-
¡û
>C191098199
CP033021
Mycoplasmatota
Metamycoplasma hominis TO0613 [CP033021]
342960
343034
+
Asn
GTT
-
¡û
>W1810706263
QMJZ01000016
Mycoplasmatota
Metamycoplasma hominis MH529 [QMJZ]
5791
5865
+
Asn
GTT
[ENA]
¡û
>W1810707420
QNHH01000010
Mycoplasmatota
Metamycoplasma hominis MH1019 [QNHH]
25594
25668
+
Asn
GTT
[ENA]
¡û
>W1810707452
QNHI01000011
Mycoplasmatota
Metamycoplasma hominis MH1002 [QNHI]
5258
5332
+
Asn
GTT
[ENA]
¡û
>W1810707482
QNHJ01000007
Mycoplasmatota
Metamycoplasma hominis MH621 [QNHJ]
80711
80785
+
Asn
GTT
[ENA]
¡û
>W1810735548
QOKN01000014
Mycoplasmatota
Metamycoplasma hominis MH1861 [QOKN]
1603
1677
+
Asn
GTT
[ENA]
¡û
>W1810735579
QOKO01000010
Mycoplasmatota
Metamycoplasma hominis MH1866 [QOKO]
5251
5325
+
Asn
GTT
[ENA]
¡û
>W1810735610
QOKP01000012
Mycoplasmatota
Metamycoplasma hominis MH1991 [QOKP]
5052
5126
+
Asn
GTT
[ENA]
¡û
>W1810735641
QOKQ01000010
Mycoplasmatota
Metamycoplasma hominis MH1817 [QOKQ]
6011
6085
+
Asn
GTT
[ENA]
¡û
>C151056700
CP009652
Mycoplasmatota
Metamycoplasma hominis ATCC 27545 LBD-4 [CP009652]
287716
287790
+
Asn
GTT
[Ensembl]
¡û
>C151056802
CP009677
Mycoplasmatota
Metamycoplasma hominis AF1 [CP009677]
51859
51785
-
Asn
GTT
-
¡û
>C151084301
CP011538
Mycoplasmatota
Metamycoplasma hominis Sprott [CP011538]
281494
281568
+
Asn
GTT
[Ensembl]
¡û
>W1511346459
JRHE01000008
Mycoplasmatota
Metamycoplasma hominis H34 [JRHE]
205141
205215
+
Asn
GTT
[ENA]
¡û
>W1511346484
JRHF01000003
Mycoplasmatota
Metamycoplasma hominis TOA [JRHF]
52121
52047
-
Asn
GTT
[ENA]
¡û
>W1511358359
JRWZ01000004
Mycoplasmatota
Metamycoplasma hominis AF3 [JRWZ]
142681
142755
+
Asn
GTT
[ENA]
¡û
>W1511358390
JRXA01000006
Mycoplasmatota
Metamycoplasma hominis PL5 [JRXA]
9282
9356
+
Asn
GTT
[ENA]
¡û
>W1511457733
JVIN01000021
Mycoplasmatota
Metamycoplasma hominis 403_MHOM [JVIN]
5018
5092
+
Asn
GTT
[ENA]
¡û
>W1511458222
JVJC01000003
Mycoplasmatota
Metamycoplasma hominis 387_MHOM [JVJC]
28474
28400
-
Asn
GTT
[ENA]
¡û
>C121016245
FP236530
Mycoplasmatota
Metamycoplasma hominis ATCC 23114 [FP236530]
279869
279943
+
Asn
GTT
[Ensembl]
¡û
Identical group No.676509 (19 seq.)
>C171068146
CP017813
Mycoplasmatota
Mycoplasmopsis pullorum B359_6 [CP017813]
541930
542004
+
Asn
GTT
-
¡û
>W141280417
JAHB01000001
Mycoplasmatota
Mycoplasmopsis cricetuli ATCC 35279 [JAHB]
24505
24579
+
Asn
GTT
[ENA]
¡û
>PL191001855
LR215032
Tenericutes
Mycoplasma gallopavonis NCTC10186 plasmid:2 (LR215032)
334915
334841
-
Asn
GTT
[ENA]
¡û
>C181188651
CP030141
Mycoplasmatota
Mycoplasmopsis anatis NCTC 10156 [CP030141]
719338
719412
+
Asn
GTT
-
¡û
>C191218077
LR214950
Mycoplasmatota
Mycoplasmopsis gallinacea NCTC10183 [LR214950]
691969
692043
+
Asn
GTT
-
¡û
>C191218440
LR215024
Mycoplasmatota
Mycoplasmopsis glycophila NCTC10194 [LR215024]
226613
226687
+
Asn
GTT
-
¡û
>C191218530
LR215035
Mycoplasmatota
Mycoplasmopsis anatis NCTC10156 [LR215035]
825733
825659
-
Asn
GTT
-
¡û
>C191218549
LR215036
Mycoplasmatota
Mycoplasmopsis citelli NCTC10181 [LR215036]
564751
564825
+
Asn
GTT
-
¡û
>C191218627
LR215039
Mycoplasmatota
Mycoplasmopsis columboralis NCTC10179 [LR215039]
752904
752830
-
Asn
GTT
-
¡û
>C191224809
LS991951
Mycoplasmatota
Mycoplasmopsis edwardii NCTC10132 [LS991951]
119110
119184
+
Asn
GTT
-
¡û
>W141561112
JHYE01000005
Mycoplasmatota
Mycoplasmopsis glycophila ATCC 35277 [JHYE]
51286
51212
-
Asn
GTT
[ENA]
¡û
>W141731301
JNIZ01000003
Mycoplasmatota
Mycoplasmopsis sturni DSM 22021 [JNIZ]
57050
57124
+
Asn
GTT
[ENA]
¡û
>W141732353
JNJZ01000005
Mycoplasmatota
Mycoplasmopsis columboralis ATCC 29258 [JNJZ]
78937
79011
+
Asn
GTT
[ENA]
¡û
>W141732389
JNKA01000020
Mycoplasmatota
Mycoplasmopsis felis ATCC 23391 [JNKA]
17387
17461
+
Asn
GTT
[ENA]
¡û
>W141807440
JPOK01000005
Mycoplasmatota
Mycoplasma buteonis [JPOK]
102197
102271
+
Asn
GTT
[ENA]
¡û
>W1911768459
QXGN01000009
Mycoplasmatota
Mycoplasmopsis gallopavonis WR1 [QXGN]
19717
19643
-
Asn
GTT
[ENA]
¡û
>C151075543
CP011021
Mycoplasmatota
Mycoplasmopsis gallinacea B2096 8B [CP011021]
615134
615208
+
Asn
GTT
[Ensembl]
¡û
>W11174737
AFVJ01000030
Mycoplasmatota
Mycoplasmopsis anatis 1340 [AFVJ]
1860
1934
+
Asn
GTT
[ENA]
¡û
>W1710601351
FUXF01000027
Mycoplasmatota
Mycoplasmopsis verecunda verecundum [FUXF]
1593
1667
+
Asn
GTT
[ENA]
¡û
Identical group No.697129 (2 seq.)
>PL191001778
LR214986
Tenericutes
Mycoplasma cynos NCTC10142 plasmid:13 (LR214986)
855959
855885
-
Asn
GTT
[ENA]
¡û
>C151099844
HF559394
Mycoplasmatota
Mycoplasmopsis cynos C142 [HF559394]
863305
863231
-
Asn
GTT
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
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