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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Tenericutes
Anticodon = TAG
HIT:
6 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.126781 (2 seq.)
>PL191001782
LR214986
Tenericutes
Mycoplasma cynos NCTC10142 plasmid:13 (LR214986)
855595
855509
-
Leu
TAG
[ENA]
¡û
>C151099848
HF559394
Mycoplasmatota
Mycoplasmopsis cynos C142 [HF559394]
862941
862855
-
Leu
TAG
[Ensembl]
¡û
Identical group No.181973 (7 seq.)
>PL191001842
LR215004
Tenericutes
Mycoplasma conjunctivae NCTC10147 plasmid:8 (LR215004)
113053
113137
+
Leu
TAG
[ENA]
¡û
>C191218146
LR214955
Mycoplasmatota
Mycoplasmopsis fermentans NCTC10117 [LR214955, LR214962]
486279
486363
+
Leu
TAG
-
¡û
>W1910002631
ATFG01000014
Mycoplasmatota
Mycoplasmopsis fermentans MF-I1 [ATFG]
46936
47020
+
Leu
TAG
[ENA]
¡û
>W1910002666
ATFH01000012
Mycoplasmatota
Mycoplasmopsis fermentans MF-I2 [ATFH]
40502
40586
+
Leu
TAG
[ENA]
¡û
>C09107658
AP009608
Mycoplasmatota
Mycoplasmopsis fermentans PG18 [AP009608]
399412
399496
+
Leu
TAG
[Ensembl]
¡û
>C11114238
CP001995
Mycoplasmatota
Mycoplasmopsis fermentans JER [CP001995]
309408
309492
+
Leu
TAG
[Ensembl]
¡û
>C11114273
CP002458
Mycoplasmatota
Mycoplasmopsis fermentans M64 [CP002458]
343558
343642
+
Leu
TAG
[Ensembl]
¡û
Identical group No.182179 (10 seq.)
>W131185101
ARTL01000024
Mycoplasmatota
Mesomycoplasma hyorhinis ATCC 17981 [ARTL]
25922
26006
+
Leu
TAG
[ENA]
¡û
>C171051520
CP016817
Mycoplasmatota
Mesomycoplasma hyorhinis MDBK-IPV [CP016817]
658898
658814
-
Leu
TAG
-
¡û
>PL191001727
LR214949
Tenericutes
Mycoplasma hyorhinis NCTC10121 plasmid:3 (LR214949)
665119
665035
-
Leu
TAG
[ENA]
¡û
>C191224793
LS991950
Mycoplasmatota
Mesomycoplasma hyorhinis NCTC10130 [LS991950]
660179
660095
-
Leu
TAG
-
¡û
>C141009332
CP006849
Mycoplasmatota
Mesomycoplasma hyorhinis DBS 1050 [CP006849]
658985
658901
-
Leu
TAG
[Ensembl]
¡û
>C10109449
CP002170
Mycoplasmatota
Mesomycoplasma hyorhinis HUB-1 [CP002170]
660995
660911
-
Leu
TAG
[Ensembl]
¡û
>W1510643876
CVNB01000014
Chlamydiota
Chlamydia trachomatis LGV98 [CVNB]
18776
18860
+
Leu
TAG
[ENA]
¡û
>C11114503
CP002669
Mycoplasmatota
Mesomycoplasma hyorhinis MCLD [CP002669]
653773
653857
+
Leu
TAG
[Ensembl]
¡û
>C121009159
CP003231
Mycoplasmatota
Mesomycoplasma hyorhinis GDL-1 [CP003231]
659002
658918
-
Leu
TAG
[Ensembl]
¡û
>C131009716
CP003914
Mycoplasmatota
Mesomycoplasma hyorhinis SK76 [CP003914]
659897
659813
-
Leu
TAG
[Ensembl]
¡û
Identical group No.199507 (2 seq.)
>W141170960
AXZE01000009
Mycoplasmatota
Metamycoplasma salivarium ATCC 23064 [AXZE]
310106
310022
-
Leu
TAG
[ENA]
¡û
>PL191001702
LR214939
Tenericutes
Mycoplasma salivarium NCTC10113 plasmid:2 (LR214939)
186168
186084
-
Leu
TAG
[ENA]
¡û
Identical group No.219489 (13 seq.)
>W1711799345
MWWN01000002
Mycoplasmatota
Mesomycoplasma hyopneumoniae [MWWN]
16922
16839
-
Leu
TAG
[ENA]
¡û
>C013577
AE017332
Mycoplasmatota
Mesomycoplasma hyopneumoniae 232 [AE017332]
119569
119486
-
Leu
TAG
[Ensembl]
¡û
>C013583
AE017244
Mycoplasmatota
Mesomycoplasma hyopneumoniae 7448 [AE017244]
335816
335899
+
Leu
TAG
[Ensembl]
¡û
>C013613
AE017243
Mycoplasmatota
Mesomycoplasma hyopneumoniae J [AE017243]
322282
322365
+
Leu
TAG
[Ensembl]
¡û
>PL191001810
LR214993
Tenericutes
Mycoplasma hyopneumoniae NCTC10127 plasmid:2 (LR214993)
26776
26693
-
Leu
TAG
[ENA]
¡û
>C181071527
CP022714
Mycoplasmatota
Mesomycoplasma hyopneumoniae KM014 [CP022714]
560449
560532
+
Leu
TAG
-
¡û
>C181096460
CP024161
Mycoplasmatota
Mesomycoplasma dispar GS01 [CP024161]
350099
350016
-
Leu
TAG
-
¡û
>C191161517
CP038641
Mycoplasmatota
Mesomycoplasma hyopneumoniae ES-2 [CP038641]
334727
334810
+
Leu
TAG
-
¡û
>C191218239
LR214971
Mycoplasmatota
Mesomycoplasma dispar NCTC10125 [LR214971]
355155
355072
-
Leu
TAG
-
¡û
>C151019169
CP007229
Mycoplasmatota
Mesomycoplasma dispar ATCC 27140 [CP007229]
355152
355069
-
Leu
TAG
[Ensembl]
¡û
>C11114474
CP002274
Mycoplasmatota
Mesomycoplasma hyopneumoniae 168 [CP002274]
350939
351022
+
Leu
TAG
[Ensembl]
¡û
>C131002147
CP003131
Mycoplasmatota
Mesomycoplasma hyopneumoniae 168-L [CP003131]
351044
351127
+
Leu
TAG
[Ensembl]
¡û
>C131007158
CP003802
Mycoplasmatota
Mesomycoplasma hyopneumoniae 7422 [CP003802]
348676
348759
+
Leu
TAG
[Ensembl]
¡û
Identical group No.220538 (2 seq.)
>PL191001859
LR215032
Tenericutes
Mycoplasma gallopavonis NCTC10186 plasmid:2 (LR215032)
334552
334469
-
Leu
TAG
[ENA]
¡û
>W1911768463
QXGN01000009
Mycoplasmatota
Mycoplasmopsis gallopavonis WR1 [QXGN]
19354
19271
-
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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