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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Tenericutes
Anticodon = TCC
HIT:
6 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.779545 (18 seq.)
>PL191001785
LR214986
Tenericutes
Mycoplasma cynos NCTC10142 plasmid:13 (LR214986)
813281
813208
-
Gly
TCC
[ENA]
¡û
>C181093507
CP024049
Mycoplasmatota
Mycoplasmopsis bovirhinis GS01 [CP024049]
712336
712263
-
Gly
TCC
-
¡û
>C191001037
AP018135
Mycoplasmatota
Mycoplasmopsis bovirhinis HAZ141_2 [AP018135]
87161
87088
-
Gly
TCC
-
¡û
>C191218255
LR214972
Mycoplasmatota
Mycoplasmopsis bovirhinis NCTC10118 [LR214972]
710338
710411
+
Gly
TCC
-
¡û
>C191218342
LR215010
Mycoplasmatota
Mycoplasmopsis canis NCTC10146 [LR215010]
182183
182256
+
Gly
TCC
-
¡û
>C191224834
LS991951
Mycoplasmatota
Mycoplasmopsis edwardii NCTC10132 [LS991951]
54173
54100
-
Gly
TCC
-
¡û
>W141558757
JHWE01000013
Mycoplasmatota
Mycoplasma leonicaptivi ATCC 49890 [JHWE]
5792
5719
-
Gly
TCC
[ENA]
¡û
>C151081636
CP011368
Mycoplasmatota
Mycoplasmopsis canis LV [CP011368]
585297
585224
-
Gly
TCC
[Ensembl]
¡û
>C151099851
HF559394
Mycoplasmatota
Mycoplasmopsis cynos C142 [HF559394]
819423
819350
-
Gly
TCC
[Ensembl]
¡û
>W10116160
ADNC01000027
Mycoplasmatota
Mycoplasmopsis alligatoris A21JP2 [ADNC]
311136
311063
-
Gly
TCC
[ENA]
¡û
>C10109283
CP001991
Mycoplasmatota
Mycoplasma crocodyli MP145 [CP001991]
226318
226245
-
Gly
TCC
[Ensembl]
¡û
>W11120694
ADNC01000027
Mycoplasmatota
Mycoplasmopsis alligatoris A21JP2 [ADNC]
311136
311063
-
Gly
TCC
[ENA]
¡û
>C161070548
CP014281
Mycoplasmatota
Mycoplasmopsis canis PG 14 [CP014281]
557911
557838
-
Gly
TCC
-
¡û
>W121060453
AJFQ01000004
Mycoplasmatota
Mycoplasmopsis canis PG 14 [AJFQ]
14442
14515
+
Gly
TCC
[ENA]
¡û
>W121060484
AJFR01000003
Mycoplasmatota
Mycoplasmopsis canis UF31 [AJFR]
14496
14569
+
Gly
TCC
[ENA]
¡û
>W121060515
AJFS01000003
Mycoplasmatota
Mycoplasmopsis canis UF33 [AJFS]
14473
14546
+
Gly
TCC
[ENA]
¡û
>W121060546
AJFT01000003
Mycoplasmatota
Mycoplasmopsis canis UFG1 [AJFT]
14415
14488
+
Gly
TCC
[ENA]
¡û
>W121060577
AJFU01000004
Mycoplasmatota
Mycoplasmopsis canis UFG4 [AJFU]
14494
14567
+
Gly
TCC
[ENA]
¡û
Identical group No.782127 (11 seq.)
>W131098190
AORH01000034
Mycoplasmatota
Mycoplasmopsis bovigenitalium 51080 [AORH]
97262
97335
+
Gly
TCC
[ENA]
¡û
>PL191001837
LR215004
Tenericutes
Mycoplasma conjunctivae NCTC10147 plasmid:8 (LR215004)
47808
47881
+
Gly
TCC
[ENA]
¡û
>C181003537
AP017902
Mycoplasmatota
Mycoplasmopsis bovigenitalium HAZ596 [AP017902]
730863
730936
+
Gly
TCC
-
¡û
>C191218141
LR214955
Mycoplasmatota
Mycoplasmopsis fermentans NCTC10117 [LR214955, LR214962]
421033
421106
+
Gly
TCC
-
¡û
>C191218196
LR214970
Mycoplasmatota
Mycoplasmopsis bovigenitalium NCTC10122 [LR214970]
618200
618127
-
Gly
TCC
-
¡û
>C191218582
LR215037
Mycoplasmatota
Mycoplasmopsis maculosa NCTC10168 [LR215037]
124664
124737
+
Gly
TCC
-
¡û
>W1910002626
ATFG01000010
Mycoplasmatota
Mycoplasmopsis fermentans MF-I1 [ATFG]
1047
1120
+
Gly
TCC
[ENA]
¡û
>W1910002661
ATFH01000010
Mycoplasmatota
Mycoplasmopsis fermentans MF-I2 [ATFH]
617
690
+
Gly
TCC
[ENA]
¡û
>C09107653
AP009608
Mycoplasmatota
Mycoplasmopsis fermentans PG18 [AP009608]
334166
334239
+
Gly
TCC
[Ensembl]
¡û
>C11114233
CP001995
Mycoplasmatota
Mycoplasmopsis fermentans JER [CP001995]
241781
241854
+
Gly
TCC
[Ensembl]
¡û
>C11114268
CP002458
Mycoplasmatota
Mycoplasmopsis fermentans M64 [CP002458]
278300
278373
+
Gly
TCC
[Ensembl]
¡û
Identical group No.782377 (13 seq.)
>W131185077
ARTL01000008
Mycoplasmatota
Mesomycoplasma hyorhinis ATCC 17981 [ARTL]
699
626
-
Gly
TCC
[ENA]
¡û
>W131214897
ATUN01000013
Mycoplasmatota
Mesomycoplasma moatsii ATCC 27625 [ATUN]
45917
45844
-
Gly
TCC
[ENA]
¡û
>C171051513
CP016817
Mycoplasmatota
Mesomycoplasma hyorhinis MDBK-IPV [CP016817]
747834
747761
-
Gly
TCC
-
¡û
>PL191001720
LR214949
Tenericutes
Mycoplasma hyorhinis NCTC10121 plasmid:3 (LR214949)
754058
753985
-
Gly
TCC
[ENA]
¡û
>C191218286
LR214997
Mycoplasmatota
Mesomycoplasma conjunctivae NCTC10147 [LR214997]
180648
180721
+
Gly
TCC
-
¡û
>C191224786
LS991950
Mycoplasmatota
Mesomycoplasma hyorhinis NCTC10130 [LS991950]
749080
749007
-
Gly
TCC
-
¡û
>C141009325
CP006849
Mycoplasmatota
Mesomycoplasma hyorhinis DBS 1050 [CP006849]
747915
747842
-
Gly
TCC
[Ensembl]
¡û
>C09107467
FM864216
Mycoplasmatota
Mesomycoplasma conjunctivae HRC/581T [FM864216]
180739
180812
+
Gly
TCC
[Ensembl]
¡û
>C151017604
CP007154
Mycoplasmatota
Mesomycoplasma bovoculi M165/69 [CP007154]
741319
741246
-
Gly
TCC
[Ensembl]
¡û
>C10109442
CP002170
Mycoplasmatota
Mesomycoplasma hyorhinis HUB-1 [CP002170]
762585
762658
+
Gly
TCC
[Ensembl]
¡û
>C11114496
CP002669
Mycoplasmatota
Mesomycoplasma hyorhinis MCLD [CP002669]
564825
564898
+
Gly
TCC
[Ensembl]
¡û
>C121009152
CP003231
Mycoplasmatota
Mesomycoplasma hyorhinis GDL-1 [CP003231]
747932
747859
-
Gly
TCC
[Ensembl]
¡û
>C131009709
CP003914
Mycoplasmatota
Mesomycoplasma hyorhinis SK76 [CP003914]
748847
748774
-
Gly
TCC
[Ensembl]
¡û
Identical group No.787009 (2 seq.)
>PL193000162
LR215004
Tenericutes
Mycoplasma conjunctivae NCTC10147 plasmid:8 (LR215004)
44610
44683
+
Gly
TCC
[ENA]
¡û
>C193003620
LR214955
Mycoplasmatota
Mycoplasmopsis fermentans NCTC10117 [LR214955, LR214962]
417835
417908
+
Gly
TCC
-
¡û
Identical group No.789889 (15 seq.)
>W131214888
ATUN01000010
Mycoplasmatota
Mesomycoplasma moatsii ATCC 27625 [ATUN]
9256
9329
+
Gly
TCC
[ENA]
¡û
>C013846
AE017308
Mycoplasmatota
Mycoplasma mobile 163K [AE017308]
242764
242691
-
Gly
TCC
[Ensembl]
¡û
>PL191001850
LR215032
Tenericutes
Mycoplasma gallopavonis NCTC10186 plasmid:2 (LR215032)
246683
246756
+
Gly
TCC
[ENA]
¡û
>PL191001851
LR215032
Tenericutes
Mycoplasma gallopavonis NCTC10186 plasmid:2 (LR215032)
255067
255140
+
Gly
TCC
[ENA]
¡û
>C181188658
CP030141
Mycoplasmatota
Mycoplasmopsis anatis NCTC 10156 [CP030141]
741860
741787
-
Gly
TCC
-
¡û
>C191218460
LR215024
Mycoplasmatota
Mycoplasmopsis glycophila NCTC10194 [LR215024]
345924
345851
-
Gly
TCC
-
¡û
>C191218461
LR215024
Mycoplasmatota
Mycoplasmopsis glycophila NCTC10194 [LR215024]
336055
335982
-
Gly
TCC
-
¡û
>C191218520
LR215035
Mycoplasmatota
Mycoplasmopsis anatis NCTC10156 [LR215035]
803210
803283
+
Gly
TCC
-
¡û
>W141558836
JHWG01000010
Mycoplasmatota
Mesomycoplasma molare ATCC 27746 [JHWG]
2724
2797
+
Gly
TCC
[ENA]
¡û
>W141561119
JHYE01000008
Mycoplasmatota
Mycoplasmopsis glycophila ATCC 35277 [JHYE]
7466
7539
+
Gly
TCC
[ENA]
¡û
>W141561126
JHYE01000017
Mycoplasmatota
Mycoplasmopsis glycophila ATCC 35277 [JHYE]
552
479
-
Gly
TCC
[ENA]
¡û
>W1911768468
QXGN01000033
Mycoplasmatota
Mycoplasmopsis gallopavonis WR1 [QXGN]
8606
8533
-
Gly
TCC
[ENA]
¡û
>W1911768469
QXGN01000033
Mycoplasmatota
Mycoplasmopsis gallopavonis WR1 [QXGN]
222
149
-
Gly
TCC
[ENA]
¡û
>W11174742
AFVJ01000030
Mycoplasmatota
Mycoplasmopsis anatis 1340 [AFVJ]
24379
24306
-
Gly
TCC
[ENA]
¡û
>W1710601348
FUXF01000010
Mycoplasmatota
Mycoplasmopsis verecunda verecundum [FUXF]
17011
17084
+
Gly
TCC
[ENA]
¡û
Identical group No.796652 (4 seq.)
>WENV180241142
OBDF01040970
[OBDF] human oral metagenome; human oral
234
161
-
Gly
TCC
[ENA]
¢þ
>WENV181178526
OEJT01000043
[OEJT] human metagenome; G_DNA_Supragingival plaque
72977
72904
-
Gly
TCC
[ENA]
¢þ
>W141170971
AXZE01000009
Mycoplasmatota
Metamycoplasma salivarium ATCC 23064 [AXZE]
60349
60276
-
Gly
TCC
[ENA]
¡û
>PL191001692
LR214939
Tenericutes
Mycoplasma salivarium NCTC10113 plasmid:2 (LR214939)
664763
664690
-
Gly
TCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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