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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
Anticodon = AAT
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.506913 (5 seq.)
>WENV180285620
OBID01572789
[OBID] metagenome; sludge
196
123
-
Ile
AAT
[ENA]
¢þ
>WENV181378586
OFRB01028018
[OFRB] wastewater metagenome; Exp Tend CN 0WW
541
614
+
Ile
AAT
[ENA]
¢þ
>WENV181379067
OFRC01016699
[OFRC] wastewater metagenome; Exp Tend CN 10WW
150
223
+
Ile
AAT
[ENA]
¢þ
>WENV170992495
MWWB01036319
[MWWB] soil metagenome; MS4-1 sample; Antarctic (ecotone) soil
839
912
+
Ile
AAT
[ENA]
¢þ
>SRA1003058
SRR002326.174794
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
167
240
+
Ile
AAT
[SRA]
Identical group No.585245 (2 seq.)
>SRA1004076
SRR002328.134882
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
121
49
-
Ile
AAT
[SRA]
>SRA1004214
SRR002328.204503
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
122
50
-
Ile
AAT
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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