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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Thermodesulfobacteriota
Anticodon = GCG
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.684106 (5 seq.)
>WENV170677106
LDZT01002511
[LDZT] terrestrial metagenome; oil reservoir sample SB1
3430
3502
+
Arg
GCG
[ENA]
¢þ
>WENV170679185
LDZU01008830
[LDZU] terrestrial metagenome; oil reservoir sample SB2
3848
3920
+
Arg
GCG
[ENA]
¢þ
>W141812367
JQDQ01000011
Thermodesulfobacteriota
Smithella sp. SCADC [JQDQ]
1152
1226
+
Arg
GCG
[ENA]
¡û
>W1610614392
LGHC01000045
Unclassified
Parcubacteria bacterium 32_520 [LGHC]
3848
3920
+
Arg
GCG
[ENA]
¡û
>W1710735445
LGHC01000045
Unclassified
Parcubacteria bacterium 32_520 [LGHC]
3848
3920
+
Arg
GCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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