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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Thermodesulfobiota
Anticodon = CAT
HIT:
4 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.360699 (2 seq.)
>C181047520
CP020921
Thermodesulfobiota
Thermodesulfobium acidiphilum 3127-1 [CP020921]
359174
359250
+
Met
CAT
-
¡û
>C11122844
CP002690
Thermodesulfobiota
Thermodesulfobium narugense DSM 14796 [CP002690]
385254
385330
+
Met
CAT
[Ensembl]
¡û
Identical group No.714767 (1 seq.)
>C11122846
CP002690
Thermodesulfobiota
Thermodesulfobium narugense DSM 14796 [CP002690]
629435
629509
+
Met
CAT
[Ensembl]
¡û
Identical group No.714768 (2 seq.)
>C181047527
CP020921
Thermodesulfobiota
Thermodesulfobium acidiphilum 3127-1 [CP020921]
664382
664456
+
Met
CAT
-
¡û
>C11122851
CP002690
Thermodesulfobiota
Thermodesulfobium narugense DSM 14796 [CP002690]
710930
711004
+
Met
CAT
[Ensembl]
¡û
Identical group No.726075 (1 seq.)
>C181047522
CP020921
Thermodesulfobiota
Thermodesulfobium acidiphilum 3127-1 [CP020921]
584970
585044
+
Met
CAT
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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