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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Thermoplasmatota
Anticodon = CAA
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.102778 (9 seq.)
>A171003632
CP004145
Unclassified
Ferroplasma acidarmanus Fer1 [CP004145]
1402911
1402827
-
Leu
CAA
-
¡û
>A171006636
CP015363
Unclassified
Ferroplasma acidiphilum Y [CP015363]
377112
377027
-
Leu
CAA
-
¡û
>W141000055
AADL01001151
Unclassified
mine drainage metagenome Group III [AADL]
715
628
-
Leu
CAA
[ENA]
¡û
>W141000069
AADL01001483
Unclassified
mine drainage metagenome Group III [AADL]
63562
63646
+
Leu
CAA
[ENA]
¡û
>A241003748
CP133600
Thermoplasmatota
Ferroplasma acidiphilum [CP133600]
91
7
-
Leu
CAA
-
¡û
>W2010602130
JABGBP010000171
Thermoplasmatota
Ferroplasma acidiphilum DSM 28986 [JABGBP]
167
252
+
Leu
CAA
[ENA]
¡û
>W1610000078
AABC05000014
Unclassified
Ferroplasma acidarmanus fer1 [AABC]
58793
58706
-
Leu
CAA
[ENA]
¡û
>WENV077063
AADL01001151
Acid Mine Drainage microbial communities from Richmond mine
715
628
-
Leu
CAA
[ENA]
>WENV077077
AADL01001483
Acid Mine Drainage microbial communities from Richmond mine
63562
63649
+
Leu
CAA
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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