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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Thermoplasmatota
Anticodon = CAC
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.538521 (10 seq.)
>A171003622
CP004145
Unclassified
Ferroplasma acidarmanus Fer1 [CP004145]
696110
696182
+
Val
CAC
-
¡û
>A171006626
CP015363
Unclassified
Ferroplasma acidiphilum Y [CP015363]
1555346
1555418
+
Val
CAC
-
¡û
>W141000044
AADL01001076
Unclassified
mine drainage metagenome Group III [AADL]
1745
1673
-
Val
CAC
[ENA]
¡û
>W141000075
AADL01001500
Unclassified
mine drainage metagenome Group III [AADL]
41702
41630
-
Val
CAC
[ENA]
¡û
>A241003684
CP133597
Thermoplasmatota
Ferroplasma sp. [CP133597]
450358
450286
-
Val
CAC
-
¡û
>A241003731
CP133600
Thermoplasmatota
Ferroplasma acidiphilum [CP133600]
1150451
1150523
+
Val
CAC
-
¡û
>W2010602124
JABGBP010000027
Thermoplasmatota
Ferroplasma acidiphilum DSM 28986 [JABGBP]
23789
23861
+
Val
CAC
[ENA]
¡û
>W1610000065
AABC05000010
Unclassified
Ferroplasma acidarmanus fer1 [AABC]
655
727
+
Val
CAC
[ENA]
¡û
>WENV077052
AADL01001076
Acid Mine Drainage microbial communities from Richmond mine
1745
1670
-
Val
CAC
[ENA]
>WENV077083
AADL01001500
Acid Mine Drainage microbial communities from Richmond mine
41702
41627
-
Val
CAC
[ENA]
Identical group No.664584 (2 seq.)
>W2010277940
CABLZR010000026
Thermoplasmatota
Methanomassiliicoccus luminyensis [CABLZR]
29430
29503
+
Val
CAC
[ENA]
¡û
>W1610082839
CAJE01000001
Unclassified
Methanomassiliicoccus luminyensis B10 [CAJE]
29430
29503
+
Val
CAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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