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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Thermoplasmatota
Anticodon = CAG
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.102779 (8 seq.)
>A171003633
CP004145
Unclassified
Ferroplasma acidarmanus Fer1 [CP004145]
1367831
1367747
-
Leu
CAG
-
¡û
>A171006637
CP015363
Unclassified
Ferroplasma acidiphilum Y [CP015363]
363749
363665
-
Leu
CAG
-
¡û
>W141000067
AADL01001450
Unclassified
mine drainage metagenome Group III [AADL]
1489
1405
-
Leu
CAG
[ENA]
¡û
>A241003681
CP133597
Thermoplasmatota
Ferroplasma sp. [CP133597]
621982
621898
-
Leu
CAG
-
¡û
>A241003736
CP133600
Thermoplasmatota
Ferroplasma acidiphilum [CP133600]
1831234
1831150
-
Leu
CAG
-
¡û
>W2010602131
JABGBP010000171
Thermoplasmatota
Ferroplasma acidiphilum DSM 28986 [JABGBP]
13530
13614
+
Leu
CAG
[ENA]
¡û
>W1610000079
AABC05000014
Unclassified
Ferroplasma acidarmanus fer1 [AABC]
23713
23629
-
Leu
CAG
[ENA]
¡û
>WENV077075
AADL01001450
Acid Mine Drainage microbial communities from Richmond mine
1489
1402
-
Leu
CAG
[ENA]
Identical group No.160016 (2 seq.)
>W2010277917
CABLZR010000012
Thermoplasmatota
Methanomassiliicoccus luminyensis [CABLZR]
138068
137984
-
Leu
CAG
[ENA]
¡û
>W1610082862
CAJE01000015
Unclassified
Methanomassiliicoccus luminyensis B10 [CAJE]
138068
137984
-
Leu
CAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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