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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Thermoplasmatota
Anticodon = CCT
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.285899 (6 seq.)
>W1930010071
JYHS01000002
Unclassified
Acidiplasma sp. MBA-1 [JYHS]
69754
69679
-
Arg
CCT
[ENA]
¡û
>A243000709
CP133597
Thermoplasmatota
Ferroplasma sp. [CP133597]
652262
652187
-
Arg
CCT
-
¡û
>A243000717
CP133599
Thermoplasmatota
Acidiplasma sp. [CP133599]
1560697
1560772
+
Arg
CCT
-
¡û
>A243000743
CP133600
Thermoplasmatota
Ferroplasma acidiphilum [CP133600]
16751
16676
-
Arg
CCT
-
¡û
>W2030013572
JABGBP010000248
Thermoplasmatota
Ferroplasma acidiphilum DSM 28986 [JABGBP]
198
273
+
Arg
CCT
[ENA]
¡û
>W2030017307
JYHS01000002
Unclassified
Acidiplasma sp. MBA-1 [JYHS]
69754
69679
-
Arg
CCT
[ENA]
¡û
Identical group No.294664 (2 seq.)
>W2010277932
CABLZR010000015
Thermoplasmatota
Methanomassiliicoccus luminyensis [CABLZR]
623591
623515
-
Arg
CCT
[ENA]
¡û
>W1610082847
CAJE01000012
Unclassified
Methanomassiliicoccus luminyensis B10 [CAJE]
623591
623514
-
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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