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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Thermoplasmatota
Anticodon = CGA
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.133755 (9 seq.)
>A171003615
CP004145
Unclassified
Ferroplasma acidarmanus Fer1 [CP004145]
210625
210709
+
Ser
CGA
-
¡û
>A171006619
CP015363
Unclassified
Ferroplasma acidiphilum Y [CP015363]
1097810
1097894
+
Ser
CGA
-
¡û
>W141000050
AADL01001095
Unclassified
mine drainage metagenome Group III [AADL]
741
657
-
Ser
CGA
[ENA]
¡û
>W141000082
AADL01001503
Unclassified
mine drainage metagenome Group III [AADL]
18806
18890
+
Ser
CGA
[ENA]
¡û
>A241003724
CP133600
Thermoplasmatota
Ferroplasma acidiphilum [CP133600]
699880
699964
+
Ser
CGA
-
¡û
>W2010602123
JABGBP010000024
Thermoplasmatota
Ferroplasma acidiphilum DSM 28986 [JABGBP]
981
1065
+
Ser
CGA
[ENA]
¡û
>W1610000054
AABC05000005
Unclassified
Ferroplasma acidarmanus fer1 [AABC]
112639
112723
+
Ser
CGA
[ENA]
¡û
>WENV077058
AADL01001095
Acid Mine Drainage microbial communities from Richmond mine
741
655
-
Ser
CGA
[ENA]
>WENV077091
AADL01001503
Acid Mine Drainage microbial communities from Richmond mine
18806
18892
+
Ser
CGA
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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