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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Thermoplasmatota
Anticodon = CGT
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.538524 (9 seq.)
>A171003618
CP004145
Unclassified
Ferroplasma acidarmanus Fer1 [CP004145]
414357
414431
+
Thr
CGT
-
¡û
>A171006622
CP015363
Unclassified
Ferroplasma acidiphilum Y [CP015363]
1302235
1302309
+
Thr
CGT
-
¡û
>W141000054
AADL01001146
Unclassified
mine drainage metagenome Group III [AADL]
722
648
-
Thr
CGT
[ENA]
¡û
>W141000079
AADL01001502
Unclassified
mine drainage metagenome Group III [AADL]
35438
35512
+
Thr
CGT
[ENA]
¡û
>A241003727
CP133600
Thermoplasmatota
Ferroplasma acidiphilum [CP133600]
902195
902269
+
Thr
CGT
-
¡û
>W2010602128
JABGBP010000073
Thermoplasmatota
Ferroplasma acidiphilum DSM 28986 [JABGBP]
4137
4211
+
Thr
CGT
[ENA]
¡û
>W1610000057
AABC05000008
Unclassified
Ferroplasma acidarmanus fer1 [AABC]
177849
177923
+
Thr
CGT
[ENA]
¡û
>WENV077062
AADL01001146
Acid Mine Drainage microbial communities from Richmond mine
722
645
-
Thr
CGT
[ENA]
>WENV077087
AADL01001502
Acid Mine Drainage microbial communities from Richmond mine
35438
35515
+
Thr
CGT
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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