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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Thermoplasmatota
Anticodon = CTG
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.538523 (10 seq.)
>A171003639
CP004145
Unclassified
Ferroplasma acidarmanus Fer1 [CP004145]
649711
649639
-
Gln
CTG
-
¡û
>A171006631
CP015363
Unclassified
Ferroplasma acidiphilum Y [CP015363]
1514155
1514083
-
Gln
CTG
-
¡û
>W141000053
AADL01001111
Unclassified
mine drainage metagenome Group III [AADL]
9571
9499
-
Gln
CTG
[ENA]
¡û
>W141000095
AADL01001561
Unclassified
mine drainage metagenome Group III [AADL]
8239
8311
+
Gln
CTG
[ENA]
¡û
>A241003664
CP133597
Thermoplasmatota
Ferroplasma sp. [CP133597]
487888
487961
+
Gln
CTG
-
¡û
>A241003742
CP133600
Thermoplasmatota
Ferroplasma acidiphilum [CP133600]
1110332
1110260
-
Gln
CTG
-
¡û
>W2010602129
JABGBP010000082
Thermoplasmatota
Ferroplasma acidiphilum DSM 28986 [JABGBP]
1155
1227
+
Gln
CTG
[ENA]
¡û
>W1610000062
AABC05000009
Unclassified
Ferroplasma acidarmanus fer1 [AABC]
186869
186797
-
Gln
CTG
[ENA]
¡û
>WENV077061
AADL01001111
Acid Mine Drainage microbial communities from Richmond mine
9571
9496
-
Gln
CTG
[ENA]
>WENV077103
AADL01001561
Acid Mine Drainage microbial communities from Richmond mine
8239
8314
+
Gln
CTG
[ENA]
Identical group No.664579 (2 seq.)
>W2010277921
CABLZR010000014
Thermoplasmatota
Methanomassiliicoccus luminyensis [CABLZR]
283124
283197
+
Gln
CTG
[ENA]
¡û
>W1610082854
CAJE01000013
Unclassified
Methanomassiliicoccus luminyensis B10 [CAJE]
283124
283197
+
Gln
CTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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