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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Thermoplasmatota
Anticodon = CTT
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.334191 (16 seq.)
>A171003637
CP004145
Unclassified
Ferroplasma acidarmanus Fer1 [CP004145]
1084990
1084915
-
Lys
CTT
-
¡û
>A171006641
CP015363
Unclassified
Ferroplasma acidiphilum Y [CP015363]
115375
115301
-
Lys
CTT
-
¡û
>W141000065
AADL01001403
Unclassified
mine drainage metagenome Group III [AADL]
928
854
-
Lys
CTT
[ENA]
¡û
>W141000093
AADL01001538
Unclassified
mine drainage metagenome Group III [AADL]
20995
21069
+
Lys
CTT
[ENA]
¡û
>W1910585079
JYHS01000002
Unclassified
Acidiplasma sp. MBA-1 [JYHS]
435616
435690
+
Lys
CTT
[ENA]
¡û
>A241003658
CP133597
Thermoplasmatota
Ferroplasma sp. [CP133597]
93490
93565
+
Lys
CTT
-
¡û
>A241003712
CP133599
Thermoplasmatota
Acidiplasma sp. [CP133599]
1225912
1225838
-
Lys
CTT
-
¡û
>A241003740
CP133600
Thermoplasmatota
Ferroplasma acidiphilum [CP133600]
1562330
1562255
-
Lys
CTT
-
¡û
>W2010602150
JABGBP010000420
Thermoplasmatota
Ferroplasma acidiphilum DSM 28986 [JABGBP]
167
93
-
Lys
CTT
[ENA]
¡û
>W2010764582
JYHS01000002
Unclassified
Acidiplasma sp. MBA-1 [JYHS]
435616
435690
+
Lys
CTT
[ENA]
¡û
>W1610000074
AABC05000011
Unclassified
Ferroplasma acidarmanus fer1 [AABC]
212056
211981
-
Lys
CTT
[ENA]
¡û
>W1610047581
BBDK01000002
Unclassified
Acidiplasma cupricumulans JCM 13668 [BBDK]
58399
58473
+
Lys
CTT
[ENA]
¡û
>W1610670451
LKBG01000001
Unclassified
Acidiplasma aeolicum VT [LKBG]
11466
11392
-
Lys
CTT
[ENA]
¡û
>W1610670498
LKBH01000125
Unclassified
Acidiplasma cupricumulans BH2 [LKBH]
20728
20802
+
Lys
CTT
[ENA]
¡û
>WENV077073
AADL01001403
Acid Mine Drainage microbial communities from Richmond mine
929
851
-
Lys
CTT
[ENA]
>WENV077101
AADL01001538
Acid Mine Drainage microbial communities from Richmond mine
20994
21072
+
Lys
CTT
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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