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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Thermoplasmatota
Anticodon = GCC
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.664581 (2 seq.)
>W2010277929
CABLZR010000015
Thermoplasmatota
Methanomassiliicoccus luminyensis [CABLZR]
535607
535682
+
Gly
GCC
[ENA]
¡û
>W1610082844
CAJE01000012
Unclassified
Methanomassiliicoccus luminyensis B10 [CAJE]
535607
535682
+
Gly
GCC
[ENA]
¡û
Identical group No.670895 (4 seq.)
>A173000303
CP015363
Unclassified
Ferroplasma acidiphilum Y [CP015363]
602440
602514
+
Gly
GCC
-
¡û
>A243000707
CP133597
Thermoplasmatota
Ferroplasma sp. [CP133597]
1488862
1488790
-
Gly
GCC
-
¡û
>A243000728
CP133600
Thermoplasmatota
Ferroplasma acidiphilum [CP133600]
237541
237615
+
Gly
GCC
-
¡û
>W2030013567
JABGBP010000115
Thermoplasmatota
Ferroplasma acidiphilum DSM 28986 [JABGBP]
4685
4759
+
Gly
GCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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