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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Thermoplasmatota
Anticodon = GCG
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.334189 (10 seq.)
>A171003621
CP004145
Unclassified
Ferroplasma acidarmanus Fer1 [CP004145]
642845
642918
+
Arg
GCG
-
¡û
>A171006625
CP015363
Unclassified
Ferroplasma acidiphilum Y [CP015363]
1507289
1507362
+
Arg
GCG
-
¡û
>W141000052
AADL01001111
Unclassified
mine drainage metagenome Group III [AADL]
2705
2778
+
Arg
GCG
[ENA]
¡û
>W141000090
AADL01001524
Unclassified
mine drainage metagenome Group III [AADL]
7652
7579
-
Arg
GCG
[ENA]
¡û
>A241003683
CP133597
Thermoplasmatota
Ferroplasma sp. [CP133597]
500441
500367
-
Arg
GCG
-
¡û
>A241003730
CP133600
Thermoplasmatota
Ferroplasma acidiphilum [CP133600]
1103466
1103539
+
Arg
GCG
-
¡û
>W2010602139
JABGBP010000267
Thermoplasmatota
Ferroplasma acidiphilum DSM 28986 [JABGBP]
5006
4933
-
Arg
GCG
[ENA]
¡û
>W1610000061
AABC05000009
Unclassified
Ferroplasma acidarmanus fer1 [AABC]
180003
180076
+
Arg
GCG
[ENA]
¡û
>WENV077060
AADL01001111
Acid Mine Drainage microbial communities from Richmond mine
2705
2781
+
Arg
GCG
[ENA]
>WENV077098
AADL01001524
Acid Mine Drainage microbial communities from Richmond mine
7652
7576
-
Arg
GCG
[ENA]
Identical group No.350020 (11 seq.)
>A171003688
CP005934
Unclassified
Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1 [CP005934]
146678
146752
+
Arg
GCG
-
¡û
>WENV181036788
ODXP01003062
[ODXP] human metagenome; G_DNA_Stool
4828
4902
+
Arg
GCG
[ENA]
¡û
>WENV181089103
OEBA01012485
[OEBA] human metagenome; G_DNA_Stool
2700
2626
-
Arg
GCG
[ENA]
¡û
>WENV181702080
OGPH01016521
[OGPH] human gut metagenome; faeces
843
917
+
Arg
GCG
[ENA]
¡û
>WENV182180913
OHNO01028870
[OHNO] human gut metagenome; feces
622
696
+
Arg
GCG
[ENA]
¡û
>WENV182537334
OIXH01005829
[OIXH] human gut metagenome; faeces
6135
6209
+
Arg
GCG
[ENA]
¡û
>WENV183039138
OLGB01003507
[OLGB] human gut metagenome; faeces
7548
7474
-
Arg
GCG
[ENA]
¡û
>WENV183042557
OLGD01005619
[OLGD] human gut metagenome; faeces
2914
2840
-
Arg
GCG
[ENA]
¡û
>WENV170972787
MTKY01000704
[MTKY] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
1307
1233
-
Arg
GCG
[ENA]
¡û
>W2010277912
CABLZR010000007
Thermoplasmatota
Methanomassiliicoccus luminyensis [CABLZR]
26968
26894
-
Arg
GCG
[ENA]
¡û
>W1610082866
CAJE01000020
Unclassified
Methanomassiliicoccus luminyensis B10 [CAJE]
26968
26894
-
Arg
GCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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