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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Thermoplasmatota
Anticodon = GCT
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.160017 (2 seq.)
>W2010277926
CABLZR010000014
Thermoplasmatota
Methanomassiliicoccus luminyensis [CABLZR]
25926
25840
-
Ser
GCT
[ENA]
¡û
>W1610082859
CAJE01000013
Unclassified
Methanomassiliicoccus luminyensis B10 [CAJE]
25926
25840
-
Ser
GCT
[ENA]
¡û
Identical group No.178051 (12 seq.)
>A171003617
CP004145
Unclassified
Ferroplasma acidarmanus Fer1 [CP004145]
335106
335190
+
Ser
GCT
-
¡û
>A171006621
CP015363
Unclassified
Ferroplasma acidiphilum Y [CP015363]
1222986
1223070
+
Ser
GCT
-
¡û
>W141000063
AADL01001315
Unclassified
mine drainage metagenome Group III [AADL]
433
517
+
Ser
GCT
[ENA]
¡û
>W141000088
AADL01001522
Unclassified
mine drainage metagenome Group III [AADL]
39559
39475
-
Ser
GCT
[ENA]
¡û
>W141000107
AADL01001635
Unclassified
mine drainage metagenome Group III [AADL]
14443
14527
+
Ser
GCT
[ENA]
¡û
>A241003679
CP133597
Thermoplasmatota
Ferroplasma sp. [CP133597]
905639
905556
-
Ser
GCT
-
¡û
>A241003726
CP133600
Thermoplasmatota
Ferroplasma acidiphilum [CP133600]
822951
823035
+
Ser
GCT
-
¡û
>W2010602146
JABGBP010000331
Thermoplasmatota
Ferroplasma acidiphilum DSM 28986 [JABGBP]
1225
1141
-
Ser
GCT
[ENA]
¡û
>W1610000056
AABC05000008
Unclassified
Ferroplasma acidarmanus fer1 [AABC]
98598
98682
+
Ser
GCT
[ENA]
¡û
>WENV077071
AADL01001315
Acid Mine Drainage microbial communities from Richmond mine
433
520
+
Ser
GCT
[ENA]
>WENV077096
AADL01001522
Acid Mine Drainage microbial communities from Richmond mine
39559
39472
-
Ser
GCT
[ENA]
>WENV077115
AADL01001635
Acid Mine Drainage microbial communities from Richmond mine
14443
14530
+
Ser
GCT
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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