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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Thermoplasmatota
Anticodon = GGA
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.133756 (10 seq.)
>A171003630
CP004145
Unclassified
Ferroplasma acidarmanus Fer1 [CP004145]
1793026
1793110
+
Ser
GGA
-
¡û
>A171006618
CP015363
Unclassified
Ferroplasma acidiphilum Y [CP015363]
754596
754680
+
Ser
GGA
-
¡û
>W141000051
AADL01001102
Unclassified
mine drainage metagenome Group III [AADL]
2857
2941
+
Ser
GGA
[ENA]
¡û
>W141000083
AADL01001503
Unclassified
mine drainage metagenome Group III [AADL]
21561
21645
+
Ser
GGA
[ENA]
¡û
>A241003678
CP133597
Thermoplasmatota
Ferroplasma sp. [CP133597]
1349049
1348965
-
Ser
GGA
-
¡û
>A241003723
CP133600
Thermoplasmatota
Ferroplasma acidiphilum [CP133600]
400524
400608
+
Ser
GGA
-
¡û
>W2010602127
JABGBP010000061
Thermoplasmatota
Ferroplasma acidiphilum DSM 28986 [JABGBP]
1109
1193
+
Ser
GGA
[ENA]
¡û
>W1610000081
AABC05000015
Unclassified
Ferroplasma acidarmanus fer1 [AABC]
56622
56706
+
Ser
GGA
[ENA]
¡û
>WENV077059
AADL01001102
Acid Mine Drainage microbial communities from Richmond mine
2857
2943
+
Ser
GGA
[ENA]
>WENV077092
AADL01001503
Acid Mine Drainage microbial communities from Richmond mine
21561
21647
+
Ser
GGA
[ENA]
Identical group No.139782 (7 seq.)
>WENV170563909
CZCB01035935
[CZCB] anaerobic digester metagenome; anaerobic digester
1802
1888
+
Ser
GGA
[ENA]
¡û
>WENV170688701
LFRM01258552
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
75307
75221
-
Ser
GGA
[ENA]
¡û
>WENV170721237
LSQX01182909
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
56228
56142
-
Ser
GGA
[ENA]
¡û
>W2010277920
CABLZR010000014
Thermoplasmatota
Methanomassiliicoccus luminyensis [CABLZR]
208049
208135
+
Ser
GGA
[ENA]
¡û
>W1610082853
CAJE01000013
Unclassified
Methanomassiliicoccus luminyensis B10 [CAJE]
208049
208135
+
Ser
GGA
[ENA]
¡û
>W1610605369
LFRW01000035
Euryarchaeota
Methanomicrobia archaeon DTU008 [LFRW]
75307
75221
-
Ser
GGA
[ENA]
¡û
>W1610651845
LJKK01000027
Unclassified
Methanomassiliicoccales archaeon RumEn M1 [LJKK]
71181
71267
+
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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