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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Thermoplasmatota
Anticodon = GGC
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.556401 (15 seq.)
>A171003719
CP005934
Unclassified
Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1 [CP005934]
344583
344510
-
Ala
GGC
-
¡û
>WENV181035960
ODXP01000081
[ODXP] human metagenome; G_DNA_Stool
64404
64331
-
Ala
GGC
[ENA]
¡û
>WENV181088683
OEBA01003651
[OEBA] human metagenome; G_DNA_Stool
3255
3328
+
Ala
GGC
[ENA]
¡û
>WENV181701998
OGPH01012074
[OGPH] human gut metagenome; faeces
222
149
-
Ala
GGC
[ENA]
¡û
>WENV182536308
OIXH01000420
[OIXH] human gut metagenome; faeces
39707
39780
+
Ala
GGC
[ENA]
¡û
>WENV183038615
OLGB01000850
[OLGB] human gut metagenome; faeces
39190
39263
+
Ala
GGC
[ENA]
¡û
>WENV183041307
OLGD01000561
[OLGD] human gut metagenome; faeces
39707
39780
+
Ala
GGC
[ENA]
¡û
>WENV170563291
CZCB01013721
[CZCB] anaerobic digester metagenome; anaerobic digester
827
754
-
Ala
GGC
[ENA]
¡û
>WENV170688697
LFRM01258552
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
52509
52582
+
Ala
GGC
[ENA]
¡û
>WENV170721235
LSQX01182909
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
33470
33543
+
Ala
GGC
[ENA]
¡û
>WENV170969799
MTKW01039935
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
1268
1195
-
Ala
GGC
[ENA]
¡û
>W2010277923
CABLZR010000014
Thermoplasmatota
Methanomassiliicoccus luminyensis [CABLZR]
252247
252172
-
Ala
GGC
[ENA]
¡û
>W1610082856
CAJE01000013
Unclassified
Methanomassiliicoccus luminyensis B10 [CAJE]
252247
252172
-
Ala
GGC
[ENA]
¡û
>W1610605365
LFRW01000035
Euryarchaeota
Methanomicrobia archaeon DTU008 [LFRW]
52509
52582
+
Ala
GGC
[ENA]
¡û
>W1610651843
LJKK01000009
Unclassified
Methanomassiliicoccales archaeon RumEn M1 [LJKK]
56643
56716
+
Ala
GGC
[ENA]
¡û
Identical group No.749749 (12 seq.)
>A171003631
CP004145
Unclassified
Ferroplasma acidarmanus Fer1 [CP004145]
1676285
1676214
-
Ala
GGC
-
¡û
>A171006635
CP015363
Unclassified
Ferroplasma acidiphilum Y [CP015363]
626516
626445
-
Ala
GGC
-
¡û
>W141000057
AADL01001227
Unclassified
mine drainage metagenome Group III [AADL]
626
555
-
Ala
GGC
[ENA]
¡û
>W141000073
AADL01001492
Unclassified
mine drainage metagenome Group III [AADL]
5598
5669
+
Ala
GGC
[ENA]
¡û
>W141000143
AADL01002036
Unclassified
mine drainage metagenome Group III [AADL]
700
628
-
Ala
GGC
[ENA]
¡û
>A241003671
CP133597
Thermoplasmatota
Ferroplasma sp. [CP133597]
1435221
1435292
+
Ala
GGC
-
¡û
>A241003747
CP133600
Thermoplasmatota
Ferroplasma acidiphilum [CP133600]
287961
287889
-
Ala
GGC
-
¡û
>W2010602142
JABGBP010000294
Thermoplasmatota
Ferroplasma acidiphilum DSM 28986 [JABGBP]
986
915
-
Ala
GGC
[ENA]
¡û
>W1610000077
AABC05000014
Unclassified
Ferroplasma acidarmanus fer1 [AABC]
332167
332096
-
Ala
GGC
[ENA]
¡û
>WENV077065
AADL01001227
Acid Mine Drainage microbial communities from Richmond mine
626
552
-
Ala
GGC
[ENA]
>WENV077081
AADL01001492
Acid Mine Drainage microbial communities from Richmond mine
5598
5672
+
Ala
GGC
[ENA]
>WENV077151
AADL01002036
Acid Mine Drainage microbial communities from Richmond mine
700
626
-
Ala
GGC
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK