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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Thermoplasmatota
Anticodon = GTT
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.538522 (12 seq.)
>A171003640
CP004145
Unclassified
Ferroplasma acidarmanus Fer1 [CP004145]
624698
624626
-
Asn
GTT
-
¡û
>A171006632
CP015363
Unclassified
Ferroplasma acidiphilum Y [CP015363]
1489141
1489069
-
Asn
GTT
-
¡û
>W141000048
AADL01001092
Unclassified
mine drainage metagenome Group III [AADL]
8499
8571
+
Asn
GTT
[ENA]
¡û
>W141000132
AADL01001881
Unclassified
mine drainage metagenome Group III [AADL]
1170
1098
-
Asn
GTT
[ENA]
¡û
>W141000156
AADL01002346
Unclassified
mine drainage metagenome Group III [AADL]
519
591
+
Asn
GTT
[ENA]
¡û
>A241003665
CP133597
Thermoplasmatota
Ferroplasma sp. [CP133597]
517448
517521
+
Asn
GTT
-
¡û
>A241003743
CP133600
Thermoplasmatota
Ferroplasma acidiphilum [CP133600]
1085318
1085246
-
Asn
GTT
-
¡û
>W2010602140
JABGBP010000289
Thermoplasmatota
Ferroplasma acidiphilum DSM 28986 [JABGBP]
13424
13496
+
Asn
GTT
[ENA]
¡û
>W1610000063
AABC05000009
Unclassified
Ferroplasma acidarmanus fer1 [AABC]
161856
161784
-
Asn
GTT
[ENA]
¡û
>WENV077056
AADL01001092
Acid Mine Drainage microbial communities from Richmond mine
8499
8574
+
Asn
GTT
[ENA]
>WENV077141
AADL01001881
Acid Mine Drainage microbial communities from Richmond mine
1170
1095
-
Asn
GTT
[ENA]
>WENV077164
AADL01002346
Acid Mine Drainage microbial communities from Richmond mine
519
594
+
Asn
GTT
[ENA]
Identical group No.661295 (1 seq.)
>W2030005544
CABLZR010000004
Thermoplasmatota
Methanomassiliicoccus luminyensis [CABLZR]
81836
81738
-
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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