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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Thermoplasmatota
Anticodon = TAA
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.102782 (8 seq.)
>A171003620
CP004145
Unclassified
Ferroplasma acidarmanus Fer1 [CP004145]
639409
639493
+
Leu
TAA
-
¡û
>A171006624
CP015363
Unclassified
Ferroplasma acidiphilum Y [CP015363]
1503853
1503937
+
Leu
TAA
-
¡û
>W141000085
AADL01001513
Unclassified
mine drainage metagenome Group III [AADL]
2916
2830
-
Leu
TAA
[ENA]
¡û
>A241003682
CP133597
Thermoplasmatota
Ferroplasma sp. [CP133597]
502712
502625
-
Leu
TAA
-
¡û
>A241003729
CP133600
Thermoplasmatota
Ferroplasma acidiphilum [CP133600]
1100030
1100114
+
Leu
TAA
-
¡û
>W2010602149
JABGBP010000417
Thermoplasmatota
Ferroplasma acidiphilum DSM 28986 [JABGBP]
1314
1398
+
Leu
TAA
[ENA]
¡û
>W1610000060
AABC05000009
Unclassified
Ferroplasma acidarmanus fer1 [AABC]
176567
176651
+
Leu
TAA
[ENA]
¡û
>WENV077093
AADL01001513
Acid Mine Drainage microbial communities from Richmond mine
2916
2827
-
Leu
TAA
[ENA]
Identical group No.160019 (2 seq.)
>W2010277939
CABLZR010000023
Thermoplasmatota
Methanomassiliicoccus luminyensis [CABLZR]
14994
15078
+
Leu
TAA
[ENA]
¡û
>W1610082840
CAJE01000004
Unclassified
Methanomassiliicoccus luminyensis B10 [CAJE]
14994
15078
+
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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